C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thrombospondin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617924 THBS2-201 ENSG00000186340 9606 - 6:169216192-169253832 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000617924
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000617924 15.827±0.00 0.223±0.00 9.402±0.00 4.104±2.75 1.004±0.00 3.016±0.00 4.250±0.00 0.444±0.00 7.137±0.00 0.296±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W0 CIL_0004W0_0001 CGP 6:168441151-169254044
CIL_0004W1 CIL_0004W1_0001 CGP 6:169215780-169702048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS:IEA extracellular region
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0016525 IDA negative regulation of angiogenesis
GO:0031091 IDA platelet alpha granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170872 Thbs2-201 protein_coding Mus_musculus 0 3596

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