C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LY6/PLAUR domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187123 LYPD6 9606 + 2:149329985-149474148 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334166 LYPD6-001 149330537-149474148 protein_coding
  ENST00000392854 LYPD6-004 149367712-149471110 nonsense_mediated_decay
  ENST00000409381 LYPD6-003 149329985-149473623 protein_coding
  ENST00000414420 LYPD6-005 149367701-149449090 protein_coding
  ENST00000418762 LYPD6-002 149330663-149471095 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334166ENST00000392854ENST00000409381ENST00000414420ENST00000418762
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334166 N/A 0.211±0.00 0.113±0.00 0.562±0.13 0.202±0.00 N/A N/A 0.335±0.00 0.222±0.14 0.075±0.00 N/A 0.246±0.10 2.266±0.76 0.183±0.00
ENST00000392854 N/A N/A 0.094±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409381 0.091±0.00 0.116±0.00 0.097±0.00 1.275±0.01 0.096±0.04 0.537±0.28 0.062±0.04 N/A 0.192±0.00 0.118±0.00 0.033±0.00 0.270±0.14 2.052±0.36 0.695±0.23
ENST00000414420 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A 0.848±0.00
ENST00000418762 N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A 0.628±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MG CIL_0006MG_0001 CGP 2:149038107-149474148
CIL_0007E0 CIL_0007E0_0001 CGP 2:149329985-149587816

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004307 lypd6 LY6/PLAUR domain containing 6 protein_coding Danio_rerio
ENSMUSG00000050447 Lypd6 LY6/PLAUR domain containing 6 protein_coding Mus_musculus

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