C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 220
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372247 RNF220-201 ENSG00000187147 9606 + 1:44405288-44651724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000372247
Transcript ID Brain
ENST00000372247 12.647±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0001 VISTA 1:43949748-44550457
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477
CIL_0007OR CIL_0007OR_0001 UCNEbase 1:44250002-44569572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030439 Rnf220-001 protein_coding Mus_musculus 0 2976
ENSMUST00000138435 Rnf220-003 processed_transcript Mus_musculus 0 1459
ENSMUST00000102690 Rnf220-006 protein_coding Mus_musculus 0 1254
ENSMUST00000094853 Rnf220-002 protein_coding Mus_musculus 0 1175
ENSMUST00000151829 Rnf220-010 processed_transcript Mus_musculus 0 632
ENSMUST00000128122 Rnf220-009 protein_coding Mus_musculus 0 603
ENSMUST00000150148 Rnf220-008 processed_transcript Mus_musculus 0 355
ENSMUST00000133971 Rnf220-004 processed_transcript Mus_musculus 2e-34 152
ENSMUST00000154974 Rnf220-005 processed_transcript Mus_musculus 0.0000000000003 82

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