C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SECIS binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187742 SECISBP2 9606 + 9:89318506-89359662 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339901 SECISBP2-004 89318519-89359642 protein_coding
  ENST00000375807 SECISBP2-001 89318506-89359650 protein_coding
  ENST00000425851 SECISBP2-002 89325960-89341479 protein_coding
  ENST00000440898 SECISBP2-003 89332588-89338510 protein_coding
  ENST00000470305 SECISBP2-005 89322200-89330445 processed_transcript
  ENST00000477484 SECISBP2-006 89332917-89339947 processed_transcript
  ENST00000496597 SECISBP2-007 89356526-89358153 processed_transcript
  ENST00000498819 SECISBP2-008 89348148-89358129 processed_transcript
  ENST00000534113 SECISBP2-201 89318851-89359662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339901ENST00000375807ENST00000470305
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339901 2.200±0.00 5.085±0.00 N/A 1.808±0.00 1.412±0.00 3.420±0.00 1.830±0.00 N/A 5.193±0.00 2.372±0.00 2.864±0.00 5.298±0.95 2.027±0.24 12.274±0.00
ENST00000375807 N/A N/A 2.419±0.00 2.895±0.34 2.204±0.27 2.694±0.52 1.199±0.18 3.726±1.81 2.120±0.90 2.972±0.85 1.487±0.00 6.272±2.52 2.871±0.16 N/A
ENST00000470305 N/A N/A 1.208±0.00 0.704±0.00 0.422±0.00 1.222±0.00 0.428±0.00 0.902±0.00 1.573±0.00 4.027±0.00 0.356±0.00 2.310±1.04 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069H CIL_00069H_0001 CGP 9:89311198-89359662

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001514 IEA selenocysteine incorporation
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex
GO:0035368 IEA selenocysteine insertion sequence binding
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:2000623 IEA negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073892 secisbp2 SECIS binding protein 2 protein_coding Danio_rerio
ENSMUSG00000035139 Secisbp2 SECIS binding protein 2 protein_coding Mus_musculus

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