C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SECIS binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339901 SECISBP2-004 ENSG00000187742 9606 + 9:89318519-89359642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000339901
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000339901 2.200±0.00 5.085±0.00 1.808±0.00 1.412±0.00 3.420±0.00 1.830±0.00 5.193±0.00 2.372±0.00 2.864±0.00 5.298±0.95 2.027±0.24 12.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069H CIL_00069H_0001 CGP 9:89311198-89359662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005634 IDA nucleus
GO:0006412 IEA translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040117 Secisbp2-001 protein_coding Mus_musculus 0 1411
ENSMUST00000146011 Secisbp2-006 retained_intron Mus_musculus 0 379

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