C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SECIS binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375807 SECISBP2-001 ENSG00000187742 9606 + 9:89318506-89359650 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000375807
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000375807 2.419±0.00 2.895±0.34 2.204±0.27 2.694±0.52 1.199±0.18 3.726±1.81 2.120±0.90 2.972±0.85 1.487±0.00 6.272±2.52 2.871±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069H CIL_00069H_0001 CGP 9:89311198-89359662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001514 IEA selenocysteine incorporation
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex
GO:0035368 IEA selenocysteine insertion sequence binding
GO:0043021 IEA ribonucleoprotein complex binding
GO:0044822 IDA poly(A) RNA binding
GO:2000623 IEA negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040117 Secisbp2-001 protein_coding Mus_musculus 0 1633
ENSMUST00000146011 Secisbp2-006 retained_intron Mus_musculus 0 379

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