C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SECIS binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035139 Secisbp2 10090 + 13:51651697-51684044 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040117 Secisbp2-001 51651697-51684044 protein_coding
  ENSMUST00000110044 Secisbp2-002 51651741-51666256 protein_coding
  ENSMUST00000127360 Secisbp2-004 51651797-51657029 processed_transcript
  ENSMUST00000146011 Secisbp2-006 51679733-51682529 retained_intron
  ENSMUST00000153877 Secisbp2-005 51681773-51683489 retained_intron
  ENSMUST00000154202 Secisbp2-003 51651797-51665345 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040117ENSMUST00000110044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040117 6.029±0.54 8.342±1.86 5.705±1.38 7.996±3.15 5.328±2.07 6.169±2.33 4.119±0.74 8.420±1.20 7.143±2.04 5.551±1.17 3.363±0.79 7.915±3.18 5.303±1.94 8.407±1.03
ENSMUST00000110044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.204±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UF CIL_0008UF_0002 VISTA 13:51620205-52221621
CIL_00069H CIL_00069H_0002 CGP 13:51645232-51684044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001514 IMP selenocysteine incorporation
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0030529 IDA ribonucleoprotein complex
GO:0035368 IDA selenocysteine insertion sequence binding
GO:0043021 IDA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:2000623 IMP negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073892 secisbp2 SECIS binding protein 2 protein_coding Danio_rerio
ENSG00000187742 SECISBP2 SECIS binding protein 2 protein_coding Homo_sapiens

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