C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nyctalopin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188937 NYX 9606 + X:41447434-41475710 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342595 NYX-001 41447434-41475710 protein_coding
  ENST00000378220 NYX-002 41447460-41475652 protein_coding
  ENST00000486842 NYX-003 41472181-41473709 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyOvaryPlacentaTestisENST00000378220
Transcript ID Bladder Kidney Ovary Placenta Testis
ENST00000378220 0.035±0.00 0.406±0.00 0.035±0.00 0.056±0.02 0.562±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LW CIL_0007LW_0001 UCNEbase X:41232520-41520330
CIL_0001X4 CIL_0001X4_0002 CGP X:41333348-41475710
CIL_0001X6 CIL_0001X6_0002 CGP X:41447434-41923463

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005622 IDA intracellular
GO:0007601 IEA visual perception
GO:0008150 ND biological_process
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061791 nyx nyctalopin protein_coding Danio_rerio
ENSMUSG00000051228 Nyx nyctalopin protein_coding Mus_musculus

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