C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001X4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020573-ENSDARG00000061791 CGP 7955 9:34367809-34394507
GeneTranscriptPositionBiotype
ENSDARG00000020573 (ddx3)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 		ENSDART00000006867 (ddx3-001) 34367809-34388046 protein_coding
ENSDART00000140064 (ddx3-002) 34373619-34379577 protein_coding
ENSDARG00000061791 (nyx)
nyctalopin 		ENSDART00000088569 (nyx-001) 34390319-34394507 protein_coding

Danio rerio Ensembl (Zv9)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0001X4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000215301-ENSG00000188937 CGP 9606 X:41333348-41475710
GeneTranscriptPositionBiotype
ENSG00000215301 (DDX3X)
DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 		ENST00000399959 (DDX3X-001) 41333398-41350274 protein_coding
ENST00000441189 (DDX3X-005) 41334162-41348259 protein_coding
ENST00000457138 (DDX3X-201) 41333398-41350269 protein_coding
ENST00000478993 (DDX3X-002) 41333398-41364472 nonsense_mediated_decay
ENST00000480592 (DDX3X-003) 41334174-41338509 processed_transcript
ENST00000542215 (DDX3X-004) 41334591-41346551 processed_transcript
ENST00000610559 (DDX3X-010) 41333348-41339083 processed_transcript
ENST00000611546 (DDX3X-008) 41334670-41342520 processed_transcript
ENST00000611968 (DDX3X-012) 41346566-41348138 protein_coding
ENST00000615313 (DDX3X-007) 41334612-41342542 processed_transcript
ENST00000615742 (DDX3X-011) 41334162-41342506 nonsense_mediated_decay
ENST00000616050 (DDX3X-013) 41346361-41358000 processed_transcript
ENST00000622198 (DDX3X-009) 41334670-41342518 processed_transcript
ENST00000622373 (DDX3X-006) 41334610-41336738 retained_intron
ENSG00000264573 (RN7SL15P)
RNA, 7SL, cytoplasmic 15, pseudogene 		ENST00000582825 (RN7SL15P-201) 41345576-41345876 misc_RNA
CIL_0001X4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000787-ENSMUSG00000051228 CGP 10090 X:13280970-13489313
GeneTranscriptPositionBiotype
ENSMUSG00000000787 (Ddx3x)
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked 		ENSMUST00000000804 (Ddx3x-001) 13280970-13294052 protein_coding
ENSMUST00000123096 (Ddx3x-004) 13287284-13288852 retained_intron
ENSMUST00000149639 (Ddx3x-005) 13287785-13289915 retained_intron
ENSMUST00000153611 (Ddx3x-003) 13281032-13287872 retained_intron
ENSMUST00000153851 (Ddx3x-002) 13281022-13292022 processed_transcript
ENSMUSG00000051228 (Nyx)
nyctalopin 		ENSMUST00000050434 (Nyx-001) 13466110-13489313 protein_coding
ENSMUSG00000080818 (Gm9434)
predicted gene 9434 		ENSMUST00000118975 (Gm9434-001) 13377866-13378678 processed_pseudogene
ENSMUSG00000080914 (Gm7129)
predicted gene 7129 		ENSMUST00000117402 (Gm7129-001) 13326023-13327019 processed_pseudogene
ENSMUSG00000081255 (Gm5380)
predicted gene 5380 		ENSMUST00000119296 (Gm5380-001) 13302285-13304420 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001X4_0001ENSDARG00000020573ENSDART00000006867ENSDART00000140064ENSDARG00000061791ENSDART00000088569CIL_0001X4_0002ENSG00000215301ENST00000399959ENST00000441189ENST00000457138ENST00000478993ENST00000480592ENST00000542215ENST00000610559ENST00000611546ENST00000611968ENST00000615313ENST00000615742ENST00000616050ENST00000622198ENST00000622373ENSG00000264573ENST00000582825CIL_0001X4_0003ENSMUSG00000000787ENSMUST00000000804ENSMUST00000123096ENSMUST00000149639ENSMUST00000153611ENSMUST00000153851ENSMUSG00000051228ENSMUST00000050434ENSMUSG00000080818ENSMUST00000118975ENSMUSG00000080914ENSMUST00000117402ENSMUSG00000081255ENSMUST00000119296
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001X4_0001ENSDARG00000020573ENSDART00000006867ENSDARG00000061791ENSDART00000088569CIL_0001X4_0002ENSG00000215301ENST00000399959ENST00000478993ENST00000542215ENSG00000264573ENST00000582825CIL_0001X4_0003ENSMUSG00000000787ENSMUST00000000804ENSMUST00000149639ENSMUST00000153611ENSMUST00000153851ENSMUSG00000051228ENSMUST00000050434ENSMUSG00000080818ENSMUST00000118975ENSMUSG00000080914ENSMUST00000117402ENSMUSG00000081255ENSMUST00000119296
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000020573 ENSDART00000006867 N/A N/A N/A 29.634±5.77 N/A N/A 25.150±19.03 20.214±5.05 12.128±0.00 N/A 8.566±0.00 N/A N/A N/A
ENSDART00000140064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061791 ENSDART00000088569 N/A N/A N/A 0.188±0.12 N/A N/A 0.057±0.00 0.036±0.01 0.249±0.00 N/A 0.032±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000215301 ENST00000399959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.177±0.00 33.464±12.00 31.434±0.00 18.865±2.51
ENST00000441189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.185±0.00
ENST00000480592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542215 N/A N/A 30.270±0.00 13.634±0.00 28.309±0.00 27.896±0.00 12.557±0.00 13.790±0.00 32.540±0.00 N/A 21.482±0.00 42.695±0.00 20.341±0.00 68.049±0.00
ENST00000610559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264573 ENST00000582825 N/A 0.399±0.00 N/A N/A 0.234±0.00 N/A 0.326±0.00 0.460±0.00 0.205±0.00 N/A N/A 0.341±0.02 0.232±0.00 0.317±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000787 ENSMUST00000000804 25.262±7.71 16.784±2.67 34.555±5.36 36.376±8.56 17.875±1.18 17.658±2.66 17.577±4.13 26.291±3.77 28.385±8.71 29.003±3.93 30.645±2.15 36.231±33.02 70.881±16.93 3.601±0.36
ENSMUST00000123096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149639 N/A N/A N/A 59.531±0.00 N/A N/A N/A N/A N/A N/A N/A 137.656±0.00 125.170±40.10 9.987±0.00
ENSMUST00000153611 N/A N/A N/A 62.297±0.00 N/A N/A N/A N/A N/A N/A N/A 180.822±0.00 131.902±62.83 49.384±0.00
ENSMUST00000153851 N/A N/A N/A N/A N/A 13.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051228 ENSMUST00000050434 0.096±0.05 0.383±0.18 0.032±0.00 0.097±0.04 0.116±0.10 0.161±0.11 0.045±0.04 0.055±0.02 0.025±0.02 0.460±0.09 0.024±0.01 1.224±0.72 0.218±0.26 0.792±0.31
ENSMUSG00000080818 ENSMUST00000118975 N/A N/A N/A 0.018±0.01 N/A N/A N/A N/A 0.011±0.00 N/A N/A 0.040±0.00 0.043±0.00 0.050±0.00
ENSMUSG00000080914 ENSMUST00000117402 0.096±0.04 0.088±0.05 0.008±0.00 0.029±0.00 0.425±0.00 N/A 0.047±0.02 0.057±0.03 0.043±0.00 N/A N/A 0.232±0.07 0.005±0.00 N/A
ENSMUSG00000081255 ENSMUST00000119296 0.032±0.02 0.076±0.03 0.004±0.00 0.019±0.01 0.047±0.02 N/A 0.017±0.00 0.020±0.00 0.010±0.01 0.025±0.00 N/A 0.065±0.05 0.007±0.00 0.031±0.02

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