C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein, transmembrane 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000189050 RNFT1 9606 - 17:59952240-59964761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305783 RNFT1-001 59952240-59964719 protein_coding
  ENST00000442346 RNFT1-201 59962333-59964737 protein_coding
  ENST00000466544 RNFT1-003 59952396-59964761 nonsense_mediated_decay
  ENST00000477207 RNFT1-004 59962321-59964737 retained_intron
  ENST00000482446 RNFT1-002 59952362-59964734 nonsense_mediated_decay
  ENST00000484257 RNFT1-005 59956488-59962599 nonsense_mediated_decay
  ENST00000486103 RNFT1-009 59953949-59958637 retained_intron
  ENST00000493737 RNFT1-006 59958434-59962966 retained_intron
  ENST00000586083 RNFT1-008 59959384-59964712 retained_intron
  ENST00000589113 RNFT1-007 59958363-59964734 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000305783ENST00000466544ENST00000482446
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000305783 N/A N/A N/A N/A N/A N/A N/A N/A 1.730±0.00 12.992±0.00
ENST00000466544 4.144±0.00 4.299±0.00 7.537±0.00 2.653±0.00 2.483±0.00 4.746±0.00 4.085±0.00 4.230±0.65 N/A 15.230±4.43
ENST00000482446 N/A N/A N/A N/A N/A N/A N/A N/A 1.968±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015917 rnft1 ring finger protein, transmembrane 1 protein_coding Danio_rerio
ENSMUSG00000020521 Rnft1 ring finger protein, transmembrane 1 protein_coding Mus_musculus

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