C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ring finger protein, transmembrane 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482446 RNFT1-002 ENSG00000189050 9606 - 17:59952362-59964734 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000482446
Transcript ID Placenta
ENST00000482446 1.968±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020827 Rnft1-001 protein_coding Mus_musculus 0 1086
ENSMUST00000125675 Rnft1-003 processed_transcript Mus_musculus 0 355

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