C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein, transmembrane 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000466544 RNFT1-003 ENSG00000189050 9606 - 17:59952396-59964761 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryTestisENST00000466544
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary Testis
ENST00000466544 4.144±0.00 4.299±0.00 7.537±0.00 2.653±0.00 2.483±0.00 4.746±0.00 4.085±0.00 4.230±0.65 15.230±4.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020827 Rnft1-001 protein_coding Mus_musculus 0 1053
ENSMUST00000125675 Rnft1-003 processed_transcript Mus_musculus 0 350

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