C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein, transmembrane 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020521 Rnft1 10090 + 11:86484657-86499025 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020827 Rnft1-001 86484657-86499025 protein_coding
  ENSMUST00000125675 Rnft1-003 86484685-86490511 processed_transcript
  ENSMUST00000131246 Rnft1-002 86484730-86486105 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020827ENSMUST00000125675
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020827 3.338±0.63 1.587±0.44 8.338±0.12 2.860±0.88 2.611±0.33 2.036±0.63 2.559±0.19 3.086±0.63 4.042±0.45 3.079±0.24 3.750±1.50 2.602±1.14 3.781±1.51 2.448±0.31
ENSMUST00000125675 N/A N/A N/A N/A N/A 3.949±0.00 N/A 4.242±0.00 4.037±0.00 N/A N/A N/A 17.426±0.00 9.014±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039N CIL_00039N_0002 CGP 11:86267033-86499025
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015917 rnft1 ring finger protein, transmembrane 1 protein_coding Danio_rerio
ENSG00000189050 RNFT1 ring finger protein, transmembrane 1 protein_coding Homo_sapiens

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