C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptonemal complex protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196074 SYCP2 9606 - 20:59863563-59933655 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357552 SYCP2-001 59863563-59933655 protein_coding
  ENST00000371001 SYCP2-201 59863564-59932154 protein_coding
  ENST00000412613 SYCP2-008 59864337-59868880 protein_coding
  ENST00000425931 SYCP2-003 59919537-59933655 protein_coding
  ENST00000446834 SYCP2-002 59877464-59933361 protein_coding
  ENST00000461538 SYCP2-006 59900777-59912226 retained_intron
  ENST00000471331 SYCP2-005 59911769-59915689 processed_transcript
  ENST00000474749 SYCP2-007 59880319-59886811 processed_transcript
  ENST00000476314 SYCP2-004 59919317-59921483 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000357552ENST00000371001ENST00000412613ENST00000425931ENST00000446834ENST00000471331ENST00000474749ENST00000476314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000357552 N/A 0.149±0.00 N/A 0.184±0.00 N/A N/A N/A 0.092±0.00 N/A N/A N/A N/A N/A
ENST00000371001 0.144±0.00 N/A N/A N/A 0.223±0.00 0.085±0.00 N/A N/A N/A N/A 0.052±0.00 0.211±0.00 1.776±0.00
ENST00000412613 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.298±0.00 N/A N/A N/A
ENST00000425931 N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A N/A N/A N/A
ENST00000446834 N/A N/A 0.068±0.00 0.346±0.00 0.474±0.00 N/A 0.089±0.00 N/A N/A N/A 0.048±0.00 N/A 10.856±0.00
ENST00000471331 N/A N/A 0.408±0.00 N/A N/A 0.906±0.00 0.496±0.00 1.358±0.00 N/A 0.209±0.00 N/A N/A 29.742±0.00
ENST00000474749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.983±0.00 N/A N/A
ENST00000476314 N/A N/A 0.793±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SC CIL_0001SC_0001 CGP 20:59577509-59933655

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 NAS synaptonemal complex
GO:0000800 IEA lateral element
GO:0003677 NAS DNA binding
GO:0005515 IEA protein binding
GO:0005634 NAS nucleus
GO:0007130 NAS synaptonemal complex assembly
GO:0007140 IEA male meiosis
GO:0007143 IEA female meiotic division
GO:0009566 IEA fertilization
GO:0009887 IEA organ morphogenesis
GO:0043066 IEA negative regulation of apoptotic process
GO:0046982 IEA protein heterodimerization activity
GO:0048808 IEA male genitalia morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088950 sycp2 synaptonemal complex protein 2 protein_coding Danio_rerio
ENSMUSG00000060445 Sycp2 synaptonemal complex protein 2 protein_coding Mus_musculus

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