C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptonemal complex protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060445 Sycp2 10090 - 2:178345293-178407685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081134 Sycp2-001 178345293-178407685 protein_coding
  ENSMUST00000132611 Sycp2-002 178346119-178374930 processed_transcript
  ENSMUST00000132765 Sycp2-004 178369390-178375270 retained_intron
  ENSMUST00000138175 Sycp2-003 178395265-178407422 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081134ENSMUST00000132611ENSMUST00000132765ENSMUST00000138175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081134 0.048±0.00 0.075±0.00 0.006±0.00 N/A 0.048±0.02 0.073±0.00 0.025±0.00 0.025±0.02 0.021±0.01 0.040±0.01 0.016±0.01 0.024±0.00 0.130±0.00 3.675±1.08
ENSMUST00000132611 0.033±0.00 N/A 0.007±0.00 0.127±0.00 0.016±0.00 N/A 0.015±0.01 N/A 0.015±0.01 N/A 0.014±0.00 0.079±0.01 0.279±0.16 N/A
ENSMUST00000132765 N/A N/A N/A N/A 0.317±0.00 N/A 0.042±0.00 N/A N/A 0.226±0.00 0.022±0.00 N/A N/A N/A
ENSMUST00000138175 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SC CIL_0001SC_0002 CGP 2:178118975-178407685

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007140 IMP male meiosis
GO:0007143 IMP female meiotic division
GO:0009566 IMP fertilization
GO:0009887 IMP organ morphogenesis
GO:0043066 IMP negative regulation of apoptotic process
GO:0046982 IPI protein heterodimerization activity
GO:0048808 IMP male genitalia morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088950 sycp2 synaptonemal complex protein 2 protein_coding Danio_rerio
ENSG00000196074 SYCP2 synaptonemal complex protein 2 protein_coding Homo_sapiens

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