C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001SC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087495-ENSG00000196074 CGP 9606 20:59577509-59933655
GeneTranscriptPositionBiotype
ENSG00000087495 (PHACTR3)
phosphatase and actin regulator 3 		ENST00000355648 (PHACTR3-007) 59676661-59847711 protein_coding
ENST00000359926 (PHACTR3-003) 59577509-59847711 protein_coding
ENST00000361300 (PHACTR3-006) 59721210-59847711 protein_coding
ENST00000371015 (PHACTR3-001) 59604548-59847711 protein_coding
ENST00000395636 (PHACTR3-002) 59721210-59847711 protein_coding
ENST00000434923 (PHACTR3-008) 59603505-59743113 protein_coding
ENST00000473657 (PHACTR3-005) 59843455-59847711 retained_intron
ENST00000492611 (PHACTR3-004) 59835853-59847711 retained_intron
ENST00000541461 (PHACTR3-201) 59628609-59847709 protein_coding
ENSG00000196074 (SYCP2)
synaptonemal complex protein 2 		ENST00000357552 (SYCP2-001) 59863563-59933655 protein_coding
ENST00000371001 (SYCP2-201) 59863564-59932154 protein_coding
ENST00000412613 (SYCP2-008) 59864337-59868880 protein_coding
ENST00000425931 (SYCP2-003) 59919537-59933655 protein_coding
ENST00000446834 (SYCP2-002) 59877464-59933361 protein_coding
ENST00000461538 (SYCP2-006) 59900777-59912226 retained_intron
ENST00000471331 (SYCP2-005) 59911769-59915689 processed_transcript
ENST00000474749 (SYCP2-007) 59880319-59886811 processed_transcript
ENST00000476314 (SYCP2-004) 59919317-59921483 processed_transcript
ENSG00000238194 (RP4-719C8.1)
 ENST00000443055 (RP4-719C8.1-002) 59626464-59628279 antisense
ENST00000451510 (RP4-719C8.1-001) 59626481-59628289 antisense
ENSG00000238777 (RNU7-141P)
RNA, U7 small nuclear 141 pseudogene 		ENST00000459304 (RNU7-141P-201) 59852667-59852728 snRNA
CIL_0001SC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027525-ENSMUSG00000060445 CGP 10090 2:178118975-178407685
GeneTranscriptPositionBiotype
ENSMUSG00000027525 (Phactr3)
phosphatase and actin regulator 3 		ENSMUST00000103065 (Phactr3-005) 178193084-178336491 protein_coding
ENSMUST00000103066 (Phactr3-003) 178141933-178336072 protein_coding
ENSMUST00000108915 (Phactr3-004) 178175349-178336491 protein_coding
ENSMUST00000108916 (Phactr3-002) 178119179-178336491 protein_coding
ENSMUST00000108917 (Phactr3-001) 178118975-178338492 protein_coding
ENSMUST00000133267 (Phactr3-007) 178327792-178332830 retained_intron
ENSMUST00000141272 (Phactr3-006) 178327556-178331766 retained_intron
ENSMUSG00000060445 (Sycp2)
synaptonemal complex protein 2 		ENSMUST00000081134 (Sycp2-001) 178345293-178407685 protein_coding
ENSMUST00000132611 (Sycp2-002) 178346119-178374930 processed_transcript
ENSMUST00000132765 (Sycp2-004) 178369390-178375270 retained_intron
ENSMUST00000138175 (Sycp2-003) 178395265-178407422 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SC_0001ENSG00000087495ENST00000355648ENST00000359926ENST00000361300ENST00000371015ENST00000395636ENST00000434923ENST00000473657ENST00000492611ENST00000541461ENSG00000196074ENST00000357552ENST00000371001ENST00000412613ENST00000425931ENST00000446834ENST00000461538ENST00000471331ENST00000474749ENST00000476314ENSG00000238194ENST00000443055ENST00000451510ENSG00000238777ENST00000459304CIL_0001SC_0002ENSMUSG00000027525ENSMUST00000103065ENSMUST00000103066ENSMUST00000108915ENSMUST00000108916ENSMUST00000108917ENSMUST00000133267ENSMUST00000141272ENSMUSG00000060445ENSMUST00000081134ENSMUST00000132611ENSMUST00000132765ENSMUST00000138175
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SC_0001ENSG00000087495ENST00000355648ENST00000359926ENST00000361300ENST00000371015ENST00000473657ENST00000492611ENSG00000196074ENST00000357552ENST00000371001ENST00000412613ENST00000425931ENST00000446834ENST00000471331ENST00000474749ENST00000476314ENSG00000238194ENST00000443055ENST00000451510ENSG00000238777ENST00000459304CIL_0001SC_0002ENSMUSG00000027525ENSMUST00000103065ENSMUST00000103066ENSMUST00000108916ENSMUST00000108917ENSMUST00000133267ENSMUST00000141272ENSMUSG00000060445ENSMUST00000081134ENSMUST00000132611ENSMUST00000132765ENSMUST00000138175
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087495 ENST00000355648 N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 0.241±0.00 N/A N/A N/A N/A
ENST00000359926 0.040±0.00 N/A N/A 2.476±0.00 0.549±0.00 0.613±0.00 N/A N/A 0.063±0.03 3.003±0.00 N/A 4.756±4.86 0.240±0.00 0.557±0.31
ENST00000361300 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A 0.016±0.00 3.762±0.00 0.169±0.00 N/A
ENST00000371015 N/A N/A N/A 6.483±3.90 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A
ENST00000395636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473657 0.025±0.00 0.013±0.00 0.076±0.00 N/A 0.109±0.00 N/A N/A N/A 0.014±0.00 0.116±0.00 0.045±0.00 0.396±0.07 N/A 0.065±0.00
ENST00000492611 N/A N/A N/A N/A 0.112±0.00 0.294±0.18 2.088±2.03 1.014±0.00 N/A 0.331±0.00 N/A 1.491±1.27 0.377±0.00 0.120±0.00
ENST00000541461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196074 ENST00000357552 N/A 0.149±0.00 N/A 0.184±0.00 N/A N/A N/A 0.092±0.00 N/A N/A N/A N/A N/A N/A
ENST00000371001 0.144±0.00 N/A N/A N/A 0.223±0.00 0.085±0.00 N/A N/A N/A N/A N/A 0.052±0.00 0.211±0.00 1.776±0.00
ENST00000412613 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.298±0.00 N/A N/A N/A N/A
ENST00000425931 N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.00 N/A N/A N/A N/A N/A
ENST00000446834 N/A N/A 0.068±0.00 0.346±0.00 0.474±0.00 N/A 0.089±0.00 N/A N/A N/A N/A 0.048±0.00 N/A 10.856±0.00
ENST00000461538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471331 N/A N/A 0.408±0.00 N/A N/A 0.906±0.00 0.496±0.00 1.358±0.00 N/A 0.209±0.00 N/A N/A N/A 29.742±0.00
ENST00000474749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.983±0.00 N/A N/A
ENST00000476314 N/A N/A 0.793±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238194 ENST00000443055 N/A N/A N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00
ENST00000451510 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A 0.036±0.00
ENSG00000238777 ENST00000459304 N/A N/A N/A 1.794±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027525 ENSMUST00000103065 0.032±0.02 0.090±0.06 0.044±0.00 17.109±0.00 N/A 0.216±0.12 0.042±0.00 0.040±0.03 0.015±0.01 0.092±0.02 N/A 0.288±0.10 N/A 1.303±0.64
ENSMUST00000103066 0.049±0.00 0.126±0.05 0.139±0.10 45.495±36.78 0.029±0.00 0.257±0.14 0.044±0.00 0.030±0.01 0.052±0.05 0.046±0.00 0.025±0.01 0.230±0.05 1.984±2.74 8.452±0.00
ENSMUST00000108915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000108916 0.006±0.00 N/A 0.036±0.00 N/A N/A N/A 0.024±0.00 0.003±0.00 0.005±0.00 N/A 0.066±0.00 0.342±0.00 0.884±0.55 1.146±0.00
ENSMUST00000108917 0.014±0.00 0.046±0.00 N/A N/A N/A 0.075±0.00 N/A N/A N/A 0.059±0.00 N/A 0.158±0.08 N/A N/A
ENSMUST00000133267 0.214±0.08 0.221±0.07 N/A N/A 0.244±0.00 N/A 0.185±0.07 N/A N/A 0.134±0.00 N/A N/A N/A N/A
ENSMUST00000141272 N/A 0.207±0.05 0.291±0.14 N/A 0.066±0.00 0.236±0.10 0.219±0.10 0.127±0.00 0.022±0.01 0.074±0.04 0.066±0.00 N/A N/A 2.224±0.19
ENSMUSG00000060445 ENSMUST00000081134 0.048±0.00 0.075±0.00 0.006±0.00 N/A 0.048±0.02 0.073±0.00 0.025±0.00 0.025±0.02 0.021±0.01 0.040±0.01 0.016±0.01 0.024±0.00 0.130±0.00 3.675±1.08
ENSMUST00000132611 0.033±0.00 N/A 0.007±0.00 0.127±0.00 0.016±0.00 N/A 0.015±0.01 N/A 0.015±0.01 N/A 0.014±0.00 0.079±0.01 0.279±0.16 N/A
ENSMUST00000132765 N/A N/A N/A N/A 0.317±0.00 N/A 0.042±0.00 N/A N/A 0.226±0.00 0.022±0.00 N/A N/A N/A
ENSMUST00000138175 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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