C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: synaptonemal complex protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357552 SYCP2-001 ENSG00000196074 9606 - 20:59863563-59933655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyENST00000357552
Transcript ID Adrenal Brain Kidney
ENST00000357552 0.149±0.00 0.184±0.00 0.092±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SC CIL_0001SC_0001 CGP 20:59577509-59933655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000795 NAS synaptonemal complex
GO:0000800 IEA lateral element
GO:0003677 NAS DNA binding
GO:0005515 IEA protein binding
GO:0005634 NAS nucleus
GO:0007130 NAS synaptonemal complex assembly
GO:0007140 IEA male meiosis
GO:0007143 IEA female meiotic division
GO:0009566 IEA fertilization
GO:0009887 IEA organ morphogenesis
GO:0043066 IEA negative regulation of apoptotic process
GO:0046982 IEA protein heterodimerization activity
GO:0048808 IEA male genitalia morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081134 Sycp2-001 protein_coding Mus_musculus 0 2625
ENSMUST00000138175 Sycp2-003 protein_coding Mus_musculus 0 599

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