C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SLIT-ROBO Rho GTPase activating protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196220 SRGAP3 9606 - 3:8980591-9363053 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360413 SRGAP3-002 8980594-9249213 protein_coding
  ENST00000383836 SRGAP3-001 8980591-9249379 protein_coding
  ENST00000433332 SRGAP3-010 9014742-9216760 processed_transcript
  ENST00000470951 SRGAP3-005 9058738-9248991 retained_intron
  ENST00000475560 SRGAP3-008 9013420-9049354 processed_transcript
  ENST00000480750 SRGAP3-009 9060231-9065530 processed_transcript
  ENST00000485983 SRGAP3-004 9033431-9081287 retained_intron
  ENST00000490348 SRGAP3-006 9235522-9249685 processed_transcript
  ENST00000490889 SRGAP3-013 9124738-9363053 processed_transcript
  ENST00000491467 SRGAP3-007 8992628-8994454 retained_intron
  ENST00000518265 SRGAP3-011 9006963-9013842 processed_transcript
  ENST00000520860 SRGAP3-012 8993959-9010374 processed_transcript
  ENST00000618999 SRGAP3-201 9006979-9124977 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungOvaryPlacentaENST00000360413ENST00000383836ENST00000490348
Transcript ID Bladder Brain Heart Kidney Liver Lung Ovary Placenta
ENST00000360413 N/A 3.912±0.86 N/A N/A N/A N/A N/A 0.837±0.00
ENST00000383836 0.973±0.00 4.607±0.09 0.566±0.00 1.265±0.00 1.380±0.00 0.691±0.00 2.964±0.00 N/A
ENST00000490348 3.298±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QQ CIL_0004QQ_0001 CGP 3:8775402-9363053
CIL_0004QB CIL_0004QB_0001 CGP 3:8980591-9386791

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060309 srgap3 SLIT-ROBO Rho GTPase activating protein 3 protein_coding Danio_rerio
ENSMUSG00000030257 Srgap3 SLIT-ROBO Rho GTPase activating protein 3 protein_coding Mus_musculus

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