C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004QB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196220-ENSG00000134077 CGP 9606 3:8980591-9386791
GeneTranscriptPositionBiotype
ENSG00000134077 (THUMPD3)
THUMP domain containing 3 		ENST00000345094 (THUMPD3-001) 9363052-9386791 protein_coding
ENST00000416603 (THUMPD3-006) 9371233-9384660 protein_coding
ENST00000417036 (THUMPD3-004) 9362971-9365190 protein_coding
ENST00000419437 (THUMPD3-005) 9363051-9371099 protein_coding
ENST00000441127 (THUMPD3-009) 9371160-9380632 protein_coding
ENST00000452837 (THUMPD3-002) 9362842-9385702 protein_coding
ENST00000461636 (THUMPD3-007) 9371454-9380888 retained_intron
ENST00000464045 (THUMPD3-010) 9383180-9384870 retained_intron
ENST00000484006 (THUMPD3-008) 9382916-9384376 retained_intron
ENST00000515662 (THUMPD3-003) 9363098-9384870 protein_coding
ENSG00000196220 (SRGAP3)
SLIT-ROBO Rho GTPase activating protein 3 		ENST00000360413 (SRGAP3-002) 8980594-9249213 protein_coding
ENST00000383836 (SRGAP3-001) 8980591-9249379 protein_coding
ENST00000433332 (SRGAP3-010) 9014742-9216760 processed_transcript
ENST00000470951 (SRGAP3-005) 9058738-9248991 retained_intron
ENST00000475560 (SRGAP3-008) 9013420-9049354 processed_transcript
ENST00000480750 (SRGAP3-009) 9060231-9065530 processed_transcript
ENST00000485983 (SRGAP3-004) 9033431-9081287 retained_intron
ENST00000490348 (SRGAP3-006) 9235522-9249685 processed_transcript
ENST00000490889 (SRGAP3-013) 9124738-9363053 processed_transcript
ENST00000491467 (SRGAP3-007) 8992628-8994454 retained_intron
ENST00000518265 (SRGAP3-011) 9006963-9013842 processed_transcript
ENST00000520860 (SRGAP3-012) 8993959-9010374 processed_transcript
ENST00000618999 (SRGAP3-201) 9006979-9124977 protein_coding
ENSG00000214041 (PGAM1P4)
phosphoglycerate mutase 1 pseudogene 4 		ENST00000397343 (PGAM1P4-001) 9348443-9349192 processed_pseudogene
ENSG00000227929 (SRGAP3-AS3)
SRGAP3 antisense RNA 3 		ENST00000432981 (SRGAP3-AS3-001) 9216895-9218087 antisense
ENSG00000228723 (SRGAP3-AS2)
SRGAP3 antisense RNA 2 		ENST00000436032 (SRGAP3-AS2-002) 9192493-9193746 antisense
ENST00000450920 (SRGAP3-AS2-001) 9192535-9194453 antisense
ENST00000600323 (SRGAP3-AS2-003) 9192497-9194347 antisense
ENST00000612302 (SRGAP3-AS2-005) 9192503-9193764 antisense
ENST00000614304 (SRGAP3-AS2-004) 9192494-9193764 antisense
ENSG00000235830 (SRGAP3-AS4)
SRGAP3 antisense RNA 4 		ENST00000449023 (SRGAP3-AS4-001) 9256759-9257507 lincRNA
CIL_0004QB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030257-ENSMUSG00000030264 CGP 10090 6:112717971-113068273
GeneTranscriptPositionBiotype
ENSMUSG00000030257 (Srgap3)
SLIT-ROBO Rho GTPase activating protein 3 		ENSMUST00000060215 (Srgap3-003) 112766564-112947266 retained_intron
ENSMUST00000088373 (Srgap3-001) 112717971-112947266 protein_coding
ENSMUST00000113169 (Srgap3-004) 112717974-112946754 protein_coding
ENSMUST00000131835 (Srgap3-006) 112739025-112766937 nonsense_mediated_decay
ENSMUST00000143475 (Srgap3-005) 112795420-112829459 retained_intron
ENSMUSG00000030264 (Thumpd3)
THUMP domain containing 3 		ENSMUST00000032398 (Thumpd3-001) 113046225-113068273 protein_coding
ENSMUST00000134657 (Thumpd3-007) 113047415-113051037 processed_transcript
ENSMUST00000137396 (Thumpd3-002) 113046315-113060797 processed_transcript
ENSMUST00000138278 (Thumpd3-005) 113046458-113047678 processed_transcript
ENSMUST00000145054 (Thumpd3-006) 113046327-113049542 processed_transcript
ENSMUST00000152795 (Thumpd3-004) 113046357-113048018 processed_transcript
ENSMUST00000153310 (Thumpd3-008) 113065426-113067896 processed_transcript
ENSMUST00000155378 (Thumpd3-003) 113046302-113055967 protein_coding
ENSMUSG00000086429 (Gt(ROSA)26Sor)
gene trap ROSA 26, Philippe Soriano 		ENSMUST00000124246 (Gt(ROSA)26Sor-002) 113070398-113077210 antisense
ENSMUST00000133467 (Gt(ROSA)26Sor-001) 113067659-113077177 antisense
ENSMUST00000159544 (Gt(ROSA)26Sor-003) 113070774-113077333 antisense
ENSMUST00000167415 (Gt(ROSA)26Sor-004) 113067428-113077191 antisense
ENSMUSG00000094189 (Gm6134)
predicted pseudogene 6134 		ENSMUST00000117265 (Gm6134-001) 112976213-112976383 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QB_0001ENSG00000134077ENST00000345094ENST00000416603ENST00000441127ENST00000452837ENST00000464045ENST00000515662ENSG00000196220ENST00000360413ENST00000383836ENST00000490348ENSG00000214041ENST00000397343ENSG00000227929ENST00000432981ENSG00000228723ENST00000436032ENST00000450920ENST00000600323ENST00000612302ENST00000614304ENSG00000235830ENST00000449023CIL_0004QB_0002ENSMUSG00000030257ENSMUST00000060215ENSMUST00000088373ENSMUST00000113169ENSMUSG00000030264ENSMUST00000032398ENSMUST00000145054ENSMUST00000155378ENSMUSG00000086429ENSMUST00000124246ENSMUST00000159544ENSMUSG00000094189ENSMUST00000117265
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000134077 ENST00000345094 1.794±0.00 N/A 1.597±0.00 4.313±0.00 4.137±0.00 2.650±0.00 2.469±0.00 3.869±0.00 2.291±0.33 1.332±0.00 1.181±0.16 3.025±1.20 1.722±0.47 4.500±0.00
ENST00000416603 5.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.343±0.00
ENST00000452837 2.161±0.00 8.423±0.00 N/A N/A 6.504±0.00 3.233±0.34 2.384±0.68 5.356±0.00 2.923±0.12 2.103±0.14 1.986±0.00 3.936±1.08 2.599±0.91 10.685±0.00
ENST00000461636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464045 N/A N/A N/A N/A N/A N/A N/A 8.056±0.00 N/A 8.525±0.00 12.476±1.78 N/A N/A N/A
ENST00000484006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515662 1.973±0.00 N/A N/A N/A N/A N/A 4.444±0.00 N/A N/A 3.124±0.00 N/A N/A N/A 7.521±0.00
ENSG00000196220 ENST00000360413 N/A N/A N/A 3.912±0.86 N/A N/A N/A N/A N/A N/A N/A N/A 0.837±0.00 N/A
ENST00000383836 N/A N/A 0.973±0.00 4.607±0.09 N/A N/A 0.566±0.00 1.265±0.00 1.380±0.00 0.691±0.00 N/A 2.964±0.00 N/A N/A
ENST00000433332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490348 N/A N/A 3.298±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214041 ENST00000397343 N/A 0.100±0.00 N/A 0.027±0.00 0.053±0.00 N/A N/A N/A N/A N/A N/A 0.061±0.00 0.093±0.00 0.068±0.00
ENSG00000227929 ENST00000432981 N/A 0.034±0.00 N/A 0.082±0.00 N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.567±0.00
ENSG00000228723 ENST00000436032 N/A N/A 0.738±0.00 N/A N/A N/A 0.062±0.00 N/A N/A 0.775±0.00 N/A 1.077±0.00 N/A N/A
ENST00000450920 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 2.327±1.96 N/A 1.228±1.14 N/A 0.022±0.00
ENST00000600323 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.102±0.00 N/A 0.244±0.06 N/A N/A
ENST00000612302 N/A N/A N/A 0.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614304 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.627±0.00 N/A N/A N/A 0.049±0.00
ENSG00000235830 ENST00000449023 N/A 0.038±0.00 N/A N/A 0.776±0.00 N/A 0.985±0.00 0.327±0.25 N/A N/A N/A 0.095±0.00 0.076±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030257 ENSMUST00000060215 1.142±0.00 N/A N/A N/A N/A N/A 0.186±0.04 N/A 0.325±0.00 0.531±0.00 N/A 2.033±0.00 6.688±0.00 1.357±0.00
ENSMUST00000088373 0.493±0.30 1.017±0.37 0.348±0.06 11.376±5.74 0.892±0.29 0.832±0.23 0.248±0.04 1.782±0.52 0.304±0.17 0.407±0.14 0.105±0.05 2.595±1.08 5.062±4.73 1.778±0.71
ENSMUST00000113169 N/A 0.456±0.12 N/A 12.590±0.00 N/A 0.450±0.16 N/A N/A N/A N/A 0.085±0.05 N/A N/A N/A
ENSMUST00000131835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030264 ENSMUST00000032398 5.093±0.72 1.660±0.00 8.095±0.47 6.778±0.86 3.800±1.23 3.915±0.82 2.425±0.27 3.369±0.74 6.822±4.95 3.277±0.45 4.425±0.25 5.866±3.74 15.170±3.50 18.678±3.69
ENSMUST00000134657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145054 N/A N/A N/A N/A N/A N/A N/A N/A 2.681±0.00 N/A N/A 2.885±1.01 N/A N/A
ENSMUST00000152795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155378 N/A N/A N/A 18.988±0.00 1.500±0.00 N/A N/A N/A N/A N/A N/A 37.631±0.00 44.747±15.51 116.647±0.00
ENSMUSG00000086429 ENSMUST00000124246 5.869±0.00 4.179±0.00 15.283±3.14 9.824±5.38 4.282±1.23 7.418±1.01 1.595±0.13 1.687±0.02 10.127±7.67 5.552±1.62 3.594±0.54 5.703±2.67 7.894±2.29 N/A
ENSMUST00000133467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159544 8.617±0.06 3.711±0.00 9.984±0.00 8.754±0.00 5.210±1.83 5.248±1.23 2.552±0.69 3.944±0.82 6.617±4.08 6.468±2.91 N/A 4.762±1.39 N/A 24.273±3.02
ENSMUST00000167415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000094189 ENSMUST00000117265 N/A N/A N/A N/A N/A N/A N/A N/A 2.286±1.30 N/A N/A N/A N/A N/A

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