C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383836 SRGAP3-001 ENSG00000196220 9606 - 3:8980591-9249379 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungOvaryENST00000383836
Transcript ID Bladder Brain Heart Kidney Liver Lung Ovary
ENST00000383836 0.973±0.00 4.607±0.09 0.566±0.00 1.265±0.00 1.380±0.00 0.691±0.00 2.964±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QQ CIL_0004QQ_0001 CGP 3:8775402-9363053
CIL_0004QB CIL_0004QB_0001 CGP 3:8980591-9386791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088373 Srgap3-001 protein_coding Mus_musculus 0 5744
ENSMUST00000113169 Srgap3-004 protein_coding Mus_musculus 0 3134
ENSMUST00000060215 Srgap3-003 retained_intron Mus_musculus 0 2399
ENSDART00000084834 srgap3-001 protein_coding Danio_rerio 0 837
ENSDART00000140403 srgap1-001 protein_coding Danio_rerio 0 725
ENSMUST00000131835 Srgap3-006 nonsense_mediated_decay Mus_musculus 0 684
ENSDART00000088908 srgap1-201 protein_coding Danio_rerio 0 481
ENSMUST00000143475 Srgap3-005 retained_intron Mus_musculus 0 394
ENSMUST00000185596 Srgap2-005 protein_coding Mus_musculus 0 307
ENSMUST00000186543 Srgap2-004 protein_coding Mus_musculus 0 307
ENSMUST00000097588 Srgap2-001 protein_coding Mus_musculus 0 307

Loading