C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SLIT-ROBO Rho GTPase activating protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030257 Srgap3 10090 - 6:112717971-112947266 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060215 Srgap3-003 112766564-112947266 retained_intron
  ENSMUST00000088373 Srgap3-001 112717971-112947266 protein_coding
  ENSMUST00000113169 Srgap3-004 112717974-112946754 protein_coding
  ENSMUST00000131835 Srgap3-006 112739025-112766937 nonsense_mediated_decay
  ENSMUST00000143475 Srgap3-005 112795420-112829459 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060215ENSMUST00000088373ENSMUST00000113169
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060215 1.142±0.00 N/A N/A N/A N/A N/A 0.186±0.04 N/A 0.325±0.00 0.531±0.00 N/A 2.033±0.00 6.688±0.00 1.357±0.00
ENSMUST00000088373 0.493±0.30 1.017±0.37 0.348±0.06 11.376±5.74 0.892±0.29 0.832±0.23 0.248±0.04 1.782±0.52 0.304±0.17 0.407±0.14 0.105±0.05 2.595±1.08 5.062±4.73 1.778±0.71
ENSMUST00000113169 N/A 0.456±0.12 N/A 12.590±0.00 N/A 0.450±0.16 N/A N/A N/A N/A 0.085±0.05 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QQ CIL_0004QQ_0002 CGP 6:112619850-112947266
CIL_0004QB CIL_0004QB_0002 CGP 6:112717971-113068273

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060309 srgap3 SLIT-ROBO Rho GTPase activating protein 3 protein_coding Danio_rerio
ENSG00000196220 SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 protein_coding Homo_sapiens

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