C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004QQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070950-ENSG00000196220 CGP 9606 3:8775402-9363053
GeneTranscriptPositionBiotype
ENSG00000070950 (RAD18)
RAD18 E3 ubiquitin protein ligase 		ENST00000264926 (RAD18-001) 8877076-8963502 protein_coding
ENST00000413832 (RAD18-007) 8941796-8963773 protein_coding
ENST00000415439 (RAD18-002) 8881264-8963431 nonsense_mediated_decay
ENST00000418463 (RAD18-010) 8941531-8963470 protein_coding
ENST00000421052 (RAD18-009) 8941551-8963470 protein_coding
ENST00000427329 (RAD18-008) 8775402-8902456 protein_coding
ENST00000429790 (RAD18-003) 8890109-8902398 protein_coding
ENST00000469793 (RAD18-005) 8946952-8963443 retained_intron
ENST00000473069 (RAD18-004) 8881420-8912469 retained_intron
ENST00000495087 (RAD18-006) 8941513-8963502 processed_transcript
ENSG00000134077 (THUMPD3)
THUMP domain containing 3 		ENST00000345094 (THUMPD3-001) 9363052-9386791 protein_coding
ENST00000416603 (THUMPD3-006) 9371233-9384660 protein_coding
ENST00000417036 (THUMPD3-004) 9362971-9365190 protein_coding
ENST00000419437 (THUMPD3-005) 9363051-9371099 protein_coding
ENST00000441127 (THUMPD3-009) 9371160-9380632 protein_coding
ENST00000452837 (THUMPD3-002) 9362842-9385702 protein_coding
ENST00000461636 (THUMPD3-007) 9371454-9380888 retained_intron
ENST00000464045 (THUMPD3-010) 9383180-9384870 retained_intron
ENST00000484006 (THUMPD3-008) 9382916-9384376 retained_intron
ENST00000515662 (THUMPD3-003) 9363098-9384870 protein_coding
ENSG00000182533 (CAV3)
caveolin 3 		ENST00000343849 (CAV3-001) 8733800-8746765 protein_coding
ENST00000397368 (CAV3-002) 8733866-8746756 protein_coding
ENST00000472766 (CAV3-003) 8733836-8841808 processed_transcript
ENSG00000196220 (SRGAP3)
SLIT-ROBO Rho GTPase activating protein 3 		ENST00000360413 (SRGAP3-002) 8980594-9249213 protein_coding
ENST00000383836 (SRGAP3-001) 8980591-9249379 protein_coding
ENST00000433332 (SRGAP3-010) 9014742-9216760 processed_transcript
ENST00000470951 (SRGAP3-005) 9058738-9248991 retained_intron
ENST00000475560 (SRGAP3-008) 9013420-9049354 processed_transcript
ENST00000480750 (SRGAP3-009) 9060231-9065530 processed_transcript
ENST00000485983 (SRGAP3-004) 9033431-9081287 retained_intron
ENST00000490348 (SRGAP3-006) 9235522-9249685 processed_transcript
ENST00000490889 (SRGAP3-013) 9124738-9363053 processed_transcript
ENST00000491467 (SRGAP3-007) 8992628-8994454 retained_intron
ENST00000518265 (SRGAP3-011) 9006963-9013842 processed_transcript
ENST00000520860 (SRGAP3-012) 8993959-9010374 processed_transcript
ENST00000618999 (SRGAP3-201) 9006979-9124977 protein_coding
ENSG00000214041 (PGAM1P4)
phosphoglycerate mutase 1 pseudogene 4 		ENST00000397343 (PGAM1P4-001) 9348443-9349192 processed_pseudogene
ENSG00000227929 (SRGAP3-AS3)
SRGAP3 antisense RNA 3 		ENST00000432981 (SRGAP3-AS3-001) 9216895-9218087 antisense
ENSG00000228723 (SRGAP3-AS2)
SRGAP3 antisense RNA 2 		ENST00000436032 (SRGAP3-AS2-002) 9192493-9193746 antisense
ENST00000450920 (SRGAP3-AS2-001) 9192535-9194453 antisense
ENST00000600323 (SRGAP3-AS2-003) 9192497-9194347 antisense
ENST00000612302 (SRGAP3-AS2-005) 9192503-9193764 antisense
ENST00000614304 (SRGAP3-AS2-004) 9192494-9193764 antisense
ENSG00000235830 (SRGAP3-AS4)
SRGAP3 antisense RNA 4 		ENST00000449023 (SRGAP3-AS4-001) 9256759-9257507 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0004QQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030254-ENSMUSG00000030257 CGP 10090 6:112619850-112947266
GeneTranscriptPositionBiotype
ENSMUSG00000030254 (Rad18)
RAD18 homolog (S. cerevisiae) 		ENSMUST00000068487 (Rad18-002) 112619975-112696670 protein_coding
ENSMUST00000077088 (Rad18-001) 112619850-112696686 protein_coding
ENSMUST00000113180 (Rad18-007) 112619973-112696611 protein_coding
ENSMUST00000113182 (Rad18-006) 112619945-112696604 protein_coding
ENSMUST00000132590 (Rad18-003) 112626415-112696648 processed_transcript
ENSMUST00000135092 (Rad18-004) 112664351-112696644 processed_transcript
ENSMUST00000142079 (Rad18-008) 112620831-112675776 protein_coding
ENSMUST00000156063 (Rad18-005) 112644484-112696633 nonsense_mediated_decay
ENSMUSG00000030257 (Srgap3)
SLIT-ROBO Rho GTPase activating protein 3 		ENSMUST00000060215 (Srgap3-003) 112766564-112947266 retained_intron
ENSMUST00000088373 (Srgap3-001) 112717971-112947266 protein_coding
ENSMUST00000113169 (Srgap3-004) 112717974-112946754 protein_coding
ENSMUST00000131835 (Srgap3-006) 112739025-112766937 nonsense_mediated_decay
ENSMUST00000143475 (Srgap3-005) 112795420-112829459 retained_intron
ENSMUSG00000097579 (Gm26799)
predicted gene, 26799 		ENSMUST00000180959 (Gm26799-201) 112696777-112704668 lincRNA

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QQ_0001ENSG00000070950ENST00000264926ENST00000415439ENST00000421052ENST00000495087ENSG00000134077ENST00000345094ENST00000416603ENST00000441127ENST00000452837ENST00000464045ENST00000515662ENSG00000182533ENST00000343849ENST00000397368ENST00000472766ENSG00000196220ENST00000360413ENST00000383836ENST00000490348ENSG00000214041ENST00000397343ENSG00000227929ENST00000432981ENSG00000228723ENST00000436032ENST00000450920ENST00000600323ENST00000612302ENST00000614304ENSG00000235830ENST00000449023CIL_0004QQ_0002ENSMUSG00000030254ENSMUST00000068487ENSMUST00000077088ENSMUST00000113180ENSMUST00000113182ENSMUST00000132590ENSMUST00000135092ENSMUST00000142079ENSMUST00000156063ENSMUSG00000030257ENSMUST00000060215ENSMUST00000088373ENSMUST00000113169ENSMUSG00000097579ENSMUST00000180959
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070950 ENST00000264926 N/A 0.825±0.00 N/A 0.484±0.18 0.781±0.30 0.170±0.00 0.277±0.00 0.527±0.44 0.421±0.24 0.382±0.00 N/A 1.211±0.09 0.783±0.10 1.107±0.12
ENST00000413832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415439 0.950±0.00 N/A 0.743±0.00 1.285±0.00 1.932±0.00 1.065±0.60 0.310±0.00 N/A 0.318±0.00 1.353±0.00 N/A 1.407±0.60 0.921±0.52 1.983±0.95
ENST00000418463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.089±0.00 N/A N/A
ENST00000427329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.259±0.00 N/A N/A N/A
ENSG00000134077 ENST00000345094 1.794±0.00 N/A 1.597±0.00 4.313±0.00 4.137±0.00 2.650±0.00 2.469±0.00 3.869±0.00 2.291±0.33 1.332±0.00 1.181±0.16 3.025±1.20 1.722±0.47 4.500±0.00
ENST00000416603 5.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.343±0.00
ENST00000452837 2.161±0.00 8.423±0.00 N/A N/A 6.504±0.00 3.233±0.34 2.384±0.68 5.356±0.00 2.923±0.12 2.103±0.14 1.986±0.00 3.936±1.08 2.599±0.91 10.685±0.00
ENST00000461636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464045 N/A N/A N/A N/A N/A N/A N/A 8.056±0.00 N/A 8.525±0.00 12.476±1.78 N/A N/A N/A
ENST00000484006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515662 1.973±0.00 N/A N/A N/A N/A N/A 4.444±0.00 N/A N/A 3.124±0.00 N/A N/A N/A 7.521±0.00
ENSG00000182533 ENST00000343849 N/A N/A N/A N/A 2.332±0.00 N/A 5.379±3.42 N/A N/A 0.313±0.16 19.633±2.17 0.040±0.01 N/A 0.626±0.39
ENST00000397368 N/A N/A N/A 0.017±0.00 0.265±0.14 0.252±0.00 N/A N/A N/A 0.309±0.00 6.619±0.00 N/A 0.072±0.04 N/A
ENST00000472766 N/A N/A N/A 0.038±0.00 0.333±0.00 N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.059±0.00 N/A
ENSG00000196220 ENST00000360413 N/A N/A N/A 3.912±0.86 N/A N/A N/A N/A N/A N/A N/A N/A 0.837±0.00 N/A
ENST00000383836 N/A N/A 0.973±0.00 4.607±0.09 N/A N/A 0.566±0.00 1.265±0.00 1.380±0.00 0.691±0.00 N/A 2.964±0.00 N/A N/A
ENST00000433332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490348 N/A N/A 3.298±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214041 ENST00000397343 N/A 0.100±0.00 N/A 0.027±0.00 0.053±0.00 N/A N/A N/A N/A N/A N/A 0.061±0.00 0.093±0.00 0.068±0.00
ENSG00000227929 ENST00000432981 N/A 0.034±0.00 N/A 0.082±0.00 N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.567±0.00
ENSG00000228723 ENST00000436032 N/A N/A 0.738±0.00 N/A N/A N/A 0.062±0.00 N/A N/A 0.775±0.00 N/A 1.077±0.00 N/A N/A
ENST00000450920 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 2.327±1.96 N/A 1.228±1.14 N/A 0.022±0.00
ENST00000600323 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.102±0.00 N/A 0.244±0.06 N/A N/A
ENST00000612302 N/A N/A N/A 0.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614304 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.627±0.00 N/A N/A N/A 0.049±0.00
ENSG00000235830 ENST00000449023 N/A 0.038±0.00 N/A N/A 0.776±0.00 N/A 0.985±0.00 0.327±0.25 N/A N/A N/A 0.095±0.00 0.076±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030254 ENSMUST00000068487 N/A 0.646±0.02 N/A N/A 0.452±0.00 0.166±0.03 0.141±0.05 0.147±0.00 0.363±0.44 0.449±0.00 0.095±0.00 1.554±0.47 N/A 4.848±0.00
ENSMUST00000077088 N/A 0.445±0.02 0.207±0.02 0.460±0.16 0.595±0.00 0.271±0.01 N/A 0.145±0.01 2.316±1.82 0.278±0.09 0.113±0.00 1.912±0.71 1.936±0.42 N/A
ENSMUST00000113180 N/A N/A N/A N/A N/A 0.415±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A
ENSMUST00000113182 N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A
ENSMUST00000132590 N/A 0.345±0.11 0.186±0.00 0.384±0.01 0.718±0.34 0.315±0.08 0.054±0.02 N/A 1.269±1.53 0.192±0.08 0.118±0.03 1.874±0.80 3.233±2.41 1.153±0.00
ENSMUST00000135092 N/A N/A N/A N/A 0.593±0.00 0.221±0.00 N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000142079 N/A N/A N/A N/A N/A 0.785±0.10 N/A N/A N/A 0.890±0.00 N/A 3.641±1.40 N/A 24.428±0.00
ENSMUST00000156063 N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000030257 ENSMUST00000060215 1.142±0.00 N/A N/A N/A N/A N/A 0.186±0.04 N/A 0.325±0.00 0.531±0.00 N/A 2.033±0.00 6.688±0.00 1.357±0.00
ENSMUST00000088373 0.493±0.30 1.017±0.37 0.348±0.06 11.376±5.74 0.892±0.29 0.832±0.23 0.248±0.04 1.782±0.52 0.304±0.17 0.407±0.14 0.105±0.05 2.595±1.08 5.062±4.73 1.778±0.71
ENSMUST00000113169 N/A 0.456±0.12 N/A 12.590±0.00 N/A 0.450±0.16 N/A N/A N/A N/A 0.085±0.05 N/A N/A N/A
ENSMUST00000131835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097579 ENSMUST00000180959 0.427±0.00 0.078±0.00 0.226±0.00 0.236±0.21 0.546±0.32 0.101±0.03 0.076±0.04 0.118±0.05 0.182±0.16 0.094±0.00 0.073±0.05 0.284±0.28 0.249±0.09 23.675±6.73

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