C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transformation/transcription domain-associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196367 TRRAP 9606 + 7:98877933-99013243 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355540 TRRAP-002 98878490-99013243 protein_coding
  ENST00000359863 TRRAP-001 98878490-99013243 protein_coding
  ENST00000417523 TRRAP-005 98877933-98890399 protein_coding
  ENST00000446306 TRRAP-004 98881090-99013239 protein_coding
  ENST00000456197 TRRAP-003 98900680-99013243 protein_coding
  ENST00000480695 TRRAP-006 98975960-98978280 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355540ENST00000359863ENST00000446306ENST00000456197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355540 1.811±0.00 1.629±0.00 1.702±0.00 0.519±0.00 2.206±0.00 2.929±0.00 0.722±0.47 1.199±0.00 N/A N/A 0.982±0.00 1.812±0.00 0.767±0.00 N/A
ENST00000359863 N/A N/A N/A 0.963±0.00 N/A N/A N/A N/A 1.002±0.00 N/A N/A N/A N/A N/A
ENST00000446306 N/A N/A N/A N/A N/A N/A 0.237±0.00 N/A 0.676±0.00 N/A N/A 2.384±0.00 N/A N/A
ENST00000456197 2.220±0.00 3.940±0.00 1.199±0.00 1.194±0.72 2.219±0.47 1.565±0.00 1.095±0.85 1.908±0.69 1.295±0.00 2.000±0.00 1.580±0.00 3.496±0.71 2.457±1.01 5.849±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TO CIL_0004TO_0001 CGP 7:98846488-99013243
CIL_0004TP CIL_0004TP_0001 CGP 7:98877933-99144100

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000125 NAS PCAF complex
GO:0000812 IDA Swr1 complex
GO:0003712 IDA transcription cofactor activity
GO:0003713 IEA transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007093 IEA mitotic cell cycle checkpoint
GO:0008152 IEA metabolic process
GO:0016573 NAS histone acetylation
GO:0016578 IDA histone deubiquitination
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0035267 IDA NuA4 histone acetyltransferase complex
GO:0043967 IDA histone H4 acetylation
GO:0043968 IDA histone H2A acetylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090442 trrap transformation/transcription domain-associated protein protein_coding Danio_rerio
ENSMUSG00000045482 Trrap transformation/transcription domain-associated protein protein_coding Mus_musculus

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