C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004TP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196367-ENSG00000198742 CGP 9606 7:98877933-99144100
GeneTranscriptPositionBiotype
ENSG00000196367 (TRRAP)
transformation/transcription domain-associated protein 		ENST00000355540 (TRRAP-002) 98878490-99013243 protein_coding
ENST00000359863 (TRRAP-001) 98878490-99013243 protein_coding
ENST00000417523 (TRRAP-005) 98877933-98890399 protein_coding
ENST00000446306 (TRRAP-004) 98881090-99013239 protein_coding
ENST00000456197 (TRRAP-003) 98900680-99013243 protein_coding
ENST00000480695 (TRRAP-006) 98975960-98978280 retained_intron
ENSG00000198742 (SMURF1)
SMAD specific E3 ubiquitin protein ligase 1 		ENST00000361125 (SMURF1-001) 99027441-99144100 protein_coding
ENST00000361368 (SMURF1-002) 99027438-99144019 protein_coding
ENST00000472627 (SMURF1-003) 99057205-99144019 processed_transcript
ENST00000480055 (SMURF1-004) 99052212-99081427 processed_transcript
ENSG00000238109 (AC004893.10)
 ENST00000442161 (AC004893.10-001) 98998538-98999930 processed_pseudogene
CIL_0004TP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045482-ENSMUSG00000038780 CGP 10090 5:144768092-144965847
GeneTranscriptPositionBiotype
ENSMUSG00000038780 (Smurf1)
SMAD specific E3 ubiquitin protein ligase 1 		ENSMUST00000085684 (Smurf1-001) 144876502-144965847 protein_coding
ENSMUST00000100461 (Smurf1-003) 144879111-144965847 protein_coding
ENSMUST00000110677 (Smurf1-002) 144876495-144965839 protein_coding
ENSMUST00000126822 (Smurf1-004) 144876495-144886476 retained_intron
ENSMUSG00000045482 (Trrap)
transformation/transcription domain-associated protein 		ENSMUST00000038980 (Trrap-006) 144771089-144859751 protein_coding
ENSMUST00000094120 (Trrap-005) 144771089-144859776 protein_coding
ENSMUST00000100467 (Trrap-001) 144768794-144859778 protein_coding
ENSMUST00000124909 (Trrap-009) 144838985-144840444 retained_intron
ENSMUST00000128550 (Trrap-007) 144768544-144777128 protein_coding
ENSMUST00000132347 (Trrap-003) 144804729-144834511 retained_intron
ENSMUST00000132925 (Trrap-004) 144785525-144859776 protein_coding
ENSMUST00000136379 (Trrap-002) 144768092-144787907 retained_intron
ENSMUST00000138589 (Trrap-010) 144857276-144859343 processed_transcript
ENSMUST00000143357 (Trrap-008) 144819798-144823110 retained_intron
ENSMUSG00000088685 (Gm23995)
predicted gene, 23995 		ENSMUST00000158060 (Gm23995-201) 144774425-144774553 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TP_0001ENSG00000196367ENST00000355540ENST00000359863ENST00000417523ENST00000446306ENST00000456197ENST00000480695ENSG00000198742ENST00000361125ENST00000361368ENST00000472627ENST00000480055ENSG00000238109ENST00000442161CIL_0004TP_0002ENSMUSG00000038780ENSMUST00000085684ENSMUST00000100461ENSMUST00000110677ENSMUST00000126822ENSMUSG00000045482ENSMUST00000038980ENSMUST00000094120ENSMUST00000100467ENSMUST00000124909ENSMUST00000128550ENSMUST00000132347ENSMUST00000132925ENSMUST00000136379ENSMUST00000138589ENSMUST00000143357ENSMUSG00000088685ENSMUST00000158060
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TP_0001ENSG00000196367ENST00000355540ENST00000359863ENST00000446306ENST00000456197ENSG00000198742ENST00000361125ENST00000361368ENST00000480055ENSG00000238109ENST00000442161CIL_0004TP_0002ENSMUSG00000038780ENSMUST00000085684ENSMUST00000100461ENSMUST00000110677ENSMUST00000126822ENSMUSG00000045482ENSMUST00000038980ENSMUST00000094120ENSMUST00000100467ENSMUST00000132347ENSMUST00000132925ENSMUST00000138589ENSMUSG00000088685ENSMUST00000158060
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196367 ENST00000355540 1.811±0.00 1.629±0.00 1.702±0.00 0.519±0.00 2.206±0.00 2.929±0.00 0.722±0.47 1.199±0.00 N/A N/A 0.982±0.00 1.812±0.00 0.767±0.00 N/A
ENST00000359863 N/A N/A N/A 0.963±0.00 N/A N/A N/A N/A 1.002±0.00 N/A N/A N/A N/A N/A
ENST00000417523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446306 N/A N/A N/A N/A N/A N/A 0.237±0.00 N/A 0.676±0.00 N/A N/A 2.384±0.00 N/A N/A
ENST00000456197 2.220±0.00 3.940±0.00 1.199±0.00 1.194±0.72 2.219±0.47 1.565±0.00 1.095±0.85 1.908±0.69 1.295±0.00 2.000±0.00 1.580±0.00 3.496±0.71 2.457±1.01 5.849±1.12
ENST00000480695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198742 ENST00000361125 2.015±0.00 N/A N/A 2.124±0.64 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000361368 8.516±0.00 4.543±0.00 2.588±0.00 3.415±1.09 4.600±0.20 5.480±2.38 2.549±1.81 6.141±0.00 2.703±0.43 9.818±0.00 2.691±1.09 9.006±3.08 6.245±1.05 19.253±3.34
ENST00000472627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480055 N/A N/A N/A N/A N/A N/A N/A 5.859±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000238109 ENST00000442161 0.094±0.00 0.475±0.00 0.448±0.00 0.304±0.03 0.288±0.08 0.114±0.00 0.019±0.00 0.056±0.00 N/A N/A 0.046±0.01 0.191±0.12 0.017±0.00 0.124±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038780 ENSMUST00000085684 13.521±2.88 7.185±1.71 8.685±1.14 9.973±3.57 14.938±3.12 9.798±0.93 6.159±1.44 5.346±1.02 1.769±0.91 13.301±2.34 2.536±0.67 15.368±4.59 6.519±3.39 6.143±2.43
ENSMUST00000100461 N/A N/A N/A 12.608±0.00 N/A N/A N/A N/A N/A N/A N/A 7.883±3.46 13.981±7.89 12.859±9.06
ENSMUST00000110677 N/A N/A N/A 2.865±0.66 N/A N/A N/A N/A N/A N/A 0.768±0.12 N/A N/A N/A
ENSMUST00000126822 N/A 1.515±0.02 1.459±0.00 2.466±0.36 5.064±0.40 2.646±0.84 N/A 0.828±0.08 0.259±0.04 3.585±0.89 N/A 2.506±1.11 0.718±0.00 N/A
ENSMUSG00000045482 ENSMUST00000038980 N/A N/A N/A N/A N/A 1.579±0.00 N/A N/A N/A N/A 0.571±0.18 6.528±2.35 8.025±0.00 1.149±0.00
ENSMUST00000094120 2.375±0.35 2.502±0.08 1.019±0.01 1.654±0.00 1.632±0.22 2.021±0.44 1.768±0.82 1.832±0.45 0.598±0.13 2.540±0.00 0.364±0.02 4.237±0.77 1.524±0.20 2.215±0.51
ENSMUST00000100467 2.816±1.23 2.590±0.98 1.722±0.00 4.190±2.23 3.807±1.70 2.777±0.81 N/A 1.381±0.46 0.928±0.43 2.246±0.49 1.246±0.00 11.140±1.67 4.559±0.54 4.286±1.34
ENSMUST00000124909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132347 5.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.763±0.00 6.419±1.06 N/A
ENSMUST00000132925 2.241±0.54 4.445±1.15 2.494±0.41 9.073±2.47 3.622±0.87 3.001±1.08 1.075±0.06 1.969±1.10 1.062±0.52 3.333±0.54 0.971±0.20 10.846±2.91 7.936±3.33 3.148±0.96
ENSMUST00000136379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138589 17.421±0.00 21.873±1.87 24.483±4.44 46.598±12.07 N/A 17.769±0.00 N/A 16.498±2.94 11.428±5.04 N/A N/A 64.541±10.24 28.825±0.00 24.866±0.00
ENSMUST00000143357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088685 ENSMUST00000158060 N/A N/A 20.491±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.000±0.00 N/A

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