C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformation/transcription domain-associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355540 TRRAP-002 ENSG00000196367 9606 + 7:98878490-99013243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyMuscleOvaryPlacentaENST00000355540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Muscle Ovary Placenta
ENST00000355540 1.811±0.00 1.629±0.00 1.702±0.00 0.519±0.00 2.206±0.00 2.929±0.00 0.722±0.47 1.199±0.00 0.982±0.00 1.812±0.00 0.767±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TO CIL_0004TO_0001 CGP 7:98846488-99013243
CIL_0004TP CIL_0004TP_0001 CGP 7:98877933-99144100

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000125 NAS PCAF complex
GO:0000812 IDA Swr1 complex
GO:0003712 IDA transcription cofactor activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0016573 NAS histone acetylation
GO:0016578 IDA histone deubiquitination
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0035267 IDA NuA4 histone acetyltransferase complex
GO:0043967 IDA histone H4 acetylation
GO:0043968 IDA histone H2A acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038980 Trrap-006 protein_coding Mus_musculus 0 13520
ENSMUST00000100467 Trrap-001 protein_coding Mus_musculus 0 11530
ENSMUST00000132925 Trrap-004 protein_coding Mus_musculus 0 6329
ENSMUST00000132347 Trrap-003 retained_intron Mus_musculus 0 5345
ENSMUST00000094120 Trrap-005 protein_coding Mus_musculus 0 5312
ENSDART00000122245 trrap-201 protein_coding Danio_rerio 0 2929
ENSDART00000152394 trrap-001 protein_coding Danio_rerio 0 1886
ENSMUST00000136379 Trrap-002 retained_intron Mus_musculus 0 981
ENSMUST00000124909 Trrap-009 retained_intron Mus_musculus 0 363
ENSMUST00000128550 Trrap-007 protein_coding Mus_musculus 0 257

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