C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transformation/transcription domain-associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045482 Trrap 10090 + 5:144768092-144859778 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038980 Trrap-006 144771089-144859751 protein_coding
  ENSMUST00000094120 Trrap-005 144771089-144859776 protein_coding
  ENSMUST00000100467 Trrap-001 144768794-144859778 protein_coding
  ENSMUST00000124909 Trrap-009 144838985-144840444 retained_intron
  ENSMUST00000128550 Trrap-007 144768544-144777128 protein_coding
  ENSMUST00000132347 Trrap-003 144804729-144834511 retained_intron
  ENSMUST00000132925 Trrap-004 144785525-144859776 protein_coding
  ENSMUST00000136379 Trrap-002 144768092-144787907 retained_intron
  ENSMUST00000138589 Trrap-010 144857276-144859343 processed_transcript
  ENSMUST00000143357 Trrap-008 144819798-144823110 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038980ENSMUST00000094120ENSMUST00000100467ENSMUST00000132347ENSMUST00000132925ENSMUST00000138589
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038980 N/A N/A N/A N/A N/A 1.579±0.00 N/A N/A N/A N/A 0.571±0.18 6.528±2.35 8.025±0.00 1.149±0.00
ENSMUST00000094120 2.375±0.35 2.502±0.08 1.019±0.01 1.654±0.00 1.632±0.22 2.021±0.44 1.768±0.82 1.832±0.45 0.598±0.13 2.540±0.00 0.364±0.02 4.237±0.77 1.524±0.20 2.215±0.51
ENSMUST00000100467 2.816±1.23 2.590±0.98 1.722±0.00 4.190±2.23 3.807±1.70 2.777±0.81 N/A 1.381±0.46 0.928±0.43 2.246±0.49 1.246±0.00 11.140±1.67 4.559±0.54 4.286±1.34
ENSMUST00000132347 5.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.763±0.00 6.419±1.06 N/A
ENSMUST00000132925 2.241±0.54 4.445±1.15 2.494±0.41 9.073±2.47 3.622±0.87 3.001±1.08 1.075±0.06 1.969±1.10 1.062±0.52 3.333±0.54 0.971±0.20 10.846±2.91 7.936±3.33 3.148±0.96
ENSMUST00000138589 17.421±0.00 21.873±1.87 24.483±4.44 46.598±12.07 N/A 17.769±0.00 N/A 16.498±2.94 11.428±5.04 N/A N/A 64.541±10.24 28.825±0.00 24.866±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TO CIL_0004TO_0002 CGP 5:144735915-144859778
CIL_0004TP CIL_0004TP_0002 CGP 5:144768092-144965847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 TAS histone acetyltransferase complex
GO:0000812 IEA Swr1 complex
GO:0003712 IEA transcription cofactor activity
GO:0003713 IDA transcription coactivator activity
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007093 IMP mitotic cell cycle checkpoint
GO:0008152 IEA metabolic process
GO:0016578 IEA histone deubiquitination
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0030914 IEA STAGA complex
GO:0033276 IEA transcription factor TFTC complex
GO:0035267 IEA NuA4 histone acetyltransferase complex
GO:0043967 IEA histone H4 acetylation
GO:0043968 IEA histone H2A acetylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090442 trrap transformation/transcription domain-associated protein protein_coding Danio_rerio
ENSG00000196367 TRRAP transformation/transcription domain-associated protein protein_coding Homo_sapiens

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