C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: X-ray repair complementing defective repair in Chinese hamster cells 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196419 XRCC6 9606 + 22:41621119-41664048 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359308 XRCC6-003 41621350-41664039 protein_coding
  ENST00000360079 XRCC6-001 41621119-41664039 protein_coding
  ENST00000402580 XRCC6-002 41621295-41664048 protein_coding
  ENST00000405506 XRCC6-005 41621983-41664034 protein_coding
  ENST00000405878 XRCC6-006 41621461-41664039 protein_coding
  ENST00000428575 XRCC6-201 41621163-41664048 protein_coding
  ENST00000464116 XRCC6-007 41621285-41628318 retained_intron
  ENST00000478914 XRCC6-008 41656953-41661699 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359308ENST00000360079ENST00000402580ENST00000405506ENST00000405878ENST00000464116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359308 N/A N/A 2.223±0.00 5.014±0.00 N/A N/A N/A N/A N/A 3.617±0.00 4.558±0.00 N/A N/A N/A
ENST00000360079 N/A N/A N/A 12.697±0.04 5.847±0.00 N/A 9.566±0.00 16.915±0.00 17.155±0.00 11.223±0.00 3.057±0.00 39.509±0.61 N/A 79.435±0.00
ENST00000402580 23.158±0.00 35.549±0.00 N/A 23.529±0.00 20.344±0.00 33.447±0.00 15.363±0.00 29.654±0.00 13.579±0.00 42.777±0.00 30.171±0.00 45.517±23.36 36.313±16.31 62.554±1.39
ENST00000405506 10.351±0.00 24.500±0.00 N/A 6.690±0.00 15.687±0.00 20.389±2.21 N/A 11.418±0.00 7.739±0.00 N/A 7.441±0.00 22.275±0.00 22.322±0.00 34.194±0.00
ENST00000405878 45.645±0.00 31.367±0.00 8.939±0.00 27.681±16.51 20.626±9.95 28.723±0.00 20.301±14.84 18.508±12.36 12.637±0.58 28.843±24.02 29.701±22.18 59.350±29.80 112.701±25.04 98.771±15.10
ENST00000464116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 138.663±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V7 CIL_0000V7_0003 CGP 22:41598028-41664048

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 IEA:TAS telomere maintenance
GO:0000783 TAS nuclear telomere cap complex
GO:0003677 NAS:IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0003690 TAS double-stranded DNA binding
GO:0003691 IDA double-stranded telomeric DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006266 TAS DNA ligation
GO:0006281 TAS DNA repair
GO:0006302 TAS double-strand break repair
GO:0006303 TAS:IEA double-strand break repair via nonhomologous end joining
GO:0006351 IEA transcription, DNA-templated
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007420 IEA brain development
GO:0008022 IPI protein C-terminus binding
GO:0010212 IEA response to ionizing radiation
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0032481 TAS positive regulation of type I interferon production
GO:0032508 IEA DNA duplex unwinding
GO:0033151 IEA V(D)J recombination
GO:0042162 IEA telomeric DNA binding
GO:0043234 IEA protein complex
GO:0043564 IEA:IDA Ku70:Ku80 complex
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0050769 IEA positive regulation of neurogenesis
GO:0051575 IMP 5'-deoxyribose-5-phosphate lyase activity
GO:0070419 IDA nonhomologous end joining complex
GO:0071475 IEA cellular hyperosmotic salinity response
GO:0071481 IEA cellular response to X-ray
GO:0075713 TAS establishment of integrated proviral latency

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071551 xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6 protein_coding Danio_rerio
ENSDARG00000090718 OTTDARG00000020547 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000022471 Xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6 protein_coding Mus_musculus

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