C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: X-ray repair complementing defective repair in Chinese hamster cells 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402580 XRCC6-002 ENSG00000196419 9606 + 22:41621295-41664048 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402580
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402580 23.158±0.00 35.549±0.00 23.529±0.00 20.344±0.00 33.447±0.00 15.363±0.00 29.654±0.00 13.579±0.00 42.777±0.00 30.171±0.00 45.517±23.36 36.313±16.31 62.554±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V7 CIL_0000V7_0003 CGP 22:41598028-41664048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 IEA:TAS telomere maintenance
GO:0000783 TAS nuclear telomere cap complex
GO:0003677 NAS:IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0003690 TAS double-stranded DNA binding
GO:0003691 IDA double-stranded telomeric DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005829 TAS cytosol
GO:0006266 TAS DNA ligation
GO:0006281 TAS DNA repair
GO:0006302 TAS double-strand break repair
GO:0006303 TAS:IEA double-strand break repair via nonhomologous end joining
GO:0006351 IEA transcription, DNA-templated
GO:0008022 IPI protein C-terminus binding
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0032481 TAS positive regulation of type I interferon production
GO:0032508 IEA DNA duplex unwinding
GO:0042162 IEA telomeric DNA binding
GO:0043564 IEA:IDA Ku70:Ku80 complex
GO:0044212 IDA transcription regulatory region DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0051575 IMP 5'-deoxyribose-5-phosphate lyase activity
GO:0070419 IDA nonhomologous end joining complex
GO:0075713 TAS establishment of integrated proviral latency

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069530 Xrcc6-001 protein_coding Mus_musculus 0 1254
ENSMUST00000100399 Xrcc6-002 protein_coding Mus_musculus 0 1254
ENSMUST00000166311 Xrcc6-010 retained_intron Mus_musculus 0 505
ENSMUST00000164779 Xrcc6-005 protein_coding Mus_musculus 0 433
ENSMUST00000170907 Xrcc6-009 retained_intron Mus_musculus 0 398
ENSMUST00000170630 Xrcc6-012 protein_coding Mus_musculus 0 263
ENSMUST00000168581 Xrcc6-006 protein_coding Mus_musculus 0 244

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