C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: X-ray repair complementing defective repair in Chinese hamster cells 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405506 XRCC6-005 ENSG00000196419 9606 + 22:41621983-41664034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000405506
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000405506 10.351±0.00 24.500±0.00 6.690±0.00 15.687±0.00 20.389±2.21 11.418±0.00 7.739±0.00 7.441±0.00 22.275±0.00 22.322±0.00 34.194±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V7 CIL_0000V7_0003 CGP 22:41598028-41664048

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 IEA telomere maintenance
GO:0003677 IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005634 IDA:IEA nucleus
GO:0006303 IEA double-strand break repair via nonhomologous end joining
GO:0032508 IEA DNA duplex unwinding
GO:0042162 IEA telomeric DNA binding
GO:0043564 IEA Ku70:Ku80 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069530 Xrcc6-001 protein_coding Mus_musculus 0 1419
ENSMUST00000100399 Xrcc6-002 protein_coding Mus_musculus 0 1419
ENSMUST00000164779 Xrcc6-005 protein_coding Mus_musculus 0 643
ENSMUST00000166311 Xrcc6-010 retained_intron Mus_musculus 0 505
ENSMUST00000168581 Xrcc6-006 protein_coding Mus_musculus 0 455
ENSMUST00000170630 Xrcc6-012 protein_coding Mus_musculus 0 427
ENSMUST00000170907 Xrcc6-009 retained_intron Mus_musculus 0 398

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