C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RFX family member 8, lacking RFX DNA binding domain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196460 RFX8 9606 - 2:101397361-101474703 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000428343 RFX8-001 101397404-101474703 protein_coding
  ENST00000481179 RFX8-003 101397361-101474703 nonsense_mediated_decay
  ENST00000484091 RFX8-004 101421698-101474701 nonsense_mediated_decay
  ENST00000492238 RFX8-005 101421383-101435106 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000428343ENST00000481179ENST00000484091ENST00000492238
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000428343 0.053±0.00 N/A 0.081±0.00 0.147±0.00 N/A 0.010±0.00 0.015±0.00 0.069±0.04 N/A N/A 0.111±0.00 0.060±0.00 N/A
ENST00000481179 0.066±0.00 N/A N/A 0.152±0.00 N/A N/A N/A N/A N/A 0.153±0.00 0.243±0.02 0.066±0.04 0.671±0.18
ENST00000484091 N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A 0.508±0.00 N/A N/A 0.084±0.00 N/A
ENST00000492238 0.048±0.00 0.121±0.00 N/A 0.220±0.00 N/A 0.043±0.00 N/A N/A N/A N/A 0.048±0.00 0.069±0.01 0.771±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0001 VISTA 2:100809636-101413030
CIL_0004QX CIL_0004QX_0001 CGP 2:101345551-101474703

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000057173 Rfx8 regulatory factor X 8 protein_coding Mus_musculus

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