C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196504 PRPF40A 9606 - 2:152651593-152717997 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354363 PRPF40A-015 152672548-152717461 nonsense_mediated_decay
  ENST00000410080 PRPF40A-001 152651593-152717981 protein_coding
  ENST00000448428 PRPF40A-008 152679056-152717457 protein_coding
  ENST00000450303 PRPF40A-002 152694437-152717932 retained_intron
  ENST00000467114 PRPF40A-009 152679129-152693111 retained_intron
  ENST00000471167 PRPF40A-013 152657955-152659377 retained_intron
  ENST00000471701 PRPF40A-014 152657885-152659104 retained_intron
  ENST00000472760 PRPF40A-012 152663131-152663855 retained_intron
  ENST00000486100 PRPF40A-003 152715995-152717997 processed_transcript
  ENST00000489741 PRPF40A-006 152694063-152716130 retained_intron
  ENST00000493468 PRPF40A-016 152676399-152717373 protein_coding
  ENST00000545856 PRPF40A-004 152672565-152717407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000410080ENST00000493468ENST00000545856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000410080 2.224±0.00 3.539±0.00 1.117±0.00 2.873±0.51 2.681±0.00 3.353±0.57 2.099±0.00 2.446±0.00 2.467±1.14 3.715±0.34 3.336±0.00 4.696±1.44 2.685±1.75 6.259±1.89
ENST00000493468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.911±0.00 N/A N/A N/A
ENST00000545856 N/A N/A N/A N/A N/A N/A 3.402±0.00 N/A N/A 5.869±0.00 3.149±0.00 17.550±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E5 CIL_0007E5_0001 CGP 2:152335237-152717997
CIL_0007DS CIL_0007DS_0001 CGP 2:152651593-152761253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007010 IMP cytoskeleton organization
GO:0007049 IEA cell cycle
GO:0008360 IMP regulation of cell shape
GO:0008380 IEA RNA splicing
GO:0016020 IDA membrane
GO:0016363 IDA nuclear matrix
GO:0016477 IMP cell migration
GO:0032465 IMP regulation of cytokinesis
GO:0044822 IDA poly(A) RNA binding
GO:0051301 IEA cell division
GO:0070064 IEA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058467 prpf40a PRP40 pre-mRNA processing factor 40 homolog A (yeast) protein_coding Danio_rerio
ENSMUSG00000061136 Prpf40a PRP40 pre-mRNA processing factor 40 homolog A (yeast) protein_coding Mus_musculus

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