C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PRP40 pre-mRNA processing factor 40 homolog A (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061136 Prpf40a 10090 - 2:53134704-53191284 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076313 Prpf40a-001 53134704-53191225 protein_coding
  ENSMUST00000125243 Prpf40a-002 53153044-53191284 protein_coding
  ENSMUST00000132031 Prpf40a-004 53176168-53191225 processed_transcript
  ENSMUST00000133384 Prpf40a-005 53139172-53145309 processed_transcript
  ENSMUST00000152922 Prpf40a-003 53172394-53191204 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076313ENSMUST00000125243ENSMUST00000132031ENSMUST00000133384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076313 1.579±0.43 N/A 5.087±0.04 8.412±3.75 1.338±0.21 1.110±0.20 0.940±0.15 1.072±0.41 4.162±3.53 1.651±0.26 2.474±0.38 9.630±0.72 6.310±1.37 2.289±0.43
ENSMUST00000125243 7.645±1.91 14.047±2.83 N/A 5.855±0.00 9.654±0.71 7.547±1.95 3.484±0.35 4.708±0.93 5.467±0.90 8.458±0.91 N/A 21.195±4.91 10.760±4.26 18.754±2.62
ENSMUST00000132031 4.504±1.08 9.954±1.95 N/A N/A 7.390±1.24 7.684±1.34 N/A 3.123±0.65 2.658±0.39 6.040±1.21 N/A 12.283±2.43 N/A N/A
ENSMUST00000133384 N/A N/A N/A 43.993±0.00 N/A N/A N/A N/A N/A N/A N/A 84.613±45.02 93.149±79.95 146.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E5 CIL_0007E5_0002 CGP 2:52857860-53191284
CIL_0007DS CIL_0007DS_0002 CGP 2:53134704-53219220

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0016363 IDA nuclear matrix
GO:0016477 ISS cell migration
GO:0032465 ISS regulation of cytokinesis
GO:0044822 IEA poly(A) RNA binding
GO:0070064 IDA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058467 prpf40a PRP40 pre-mRNA processing factor 40 homolog A (yeast) protein_coding Danio_rerio
ENSG00000196504 PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) protein_coding Homo_sapiens

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