C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000410080 PRPF40A-001 ENSG00000196504 9606 - 2:152651593-152717981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000410080
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000410080 2.224±0.00 3.539±0.00 1.117±0.00 2.873±0.51 2.681±0.00 3.353±0.57 2.099±0.00 2.446±0.00 2.467±1.14 3.715±0.34 3.336±0.00 4.696±1.44 2.685±1.75 6.259±1.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007E5 CIL_0007E5_0001 CGP 2:152335237-152717997
CIL_0007DS CIL_0007DS_0001 CGP 2:152651593-152761253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007010 IMP cytoskeleton organization
GO:0007049 IEA cell cycle
GO:0008360 IMP regulation of cell shape
GO:0008380 IEA RNA splicing
GO:0016020 IDA membrane
GO:0016363 IDA nuclear matrix
GO:0016477 IMP cell migration
GO:0032465 IMP regulation of cytokinesis
GO:0044822 IDA poly(A) RNA binding
GO:0051301 IEA cell division
GO:0070064 IEA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076313 Prpf40a-001 protein_coding Mus_musculus 0 4852
ENSMUST00000125243 Prpf40a-002 protein_coding Mus_musculus 0 1742
ENSMUST00000133384 Prpf40a-005 processed_transcript Mus_musculus 0 856
ENSMUST00000152922 Prpf40a-003 processed_transcript Mus_musculus 0 412
ENSMUST00000132031 Prpf40a-004 processed_transcript Mus_musculus 0 392

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