C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: striatin, calmodulin binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196792 STRN3 9606 - 14:30893799-31026401 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355683 STRN3-001 30893799-31026401 protein_coding
  ENST00000357479 STRN3-002 30895203-31026382 protein_coding
  ENST00000366206 STRN3-007 30912066-30932398 processed_transcript
  ENST00000554124 STRN3-008 30905417-30912311 retained_intron
  ENST00000554991 STRN3-005 30913524-30935304 protein_coding
  ENST00000555152 STRN3-006 30947112-30964509 protein_coding
  ENST00000555358 STRN3-003 30895345-31026319 nonsense_mediated_decay
  ENST00000556577 STRN3-004 30913524-30936621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355683ENST00000357479ENST00000555358ENST00000556577
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355683 7.924±0.00 5.694±0.00 1.773±0.00 3.216±0.31 5.137±2.46 7.054±2.08 5.132±2.61 5.099±1.88 5.084±1.32 4.346±1.72 13.093±10.87 8.133±3.92 3.239±1.68 12.432±3.53
ENST00000357479 N/A N/A N/A 2.284±0.19 2.205±0.47 N/A N/A 2.083±0.00 N/A N/A N/A 4.375±1.55 N/A 8.684±0.00
ENST00000555358 N/A N/A 1.184±0.00 N/A N/A N/A 1.474±0.00 N/A 14.298±0.00 N/A N/A 5.960±0.00 2.806±0.00 N/A
ENST00000556577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.841±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KV CIL_0007KV_0002 UCNEbase 14:30606668-30894124
CIL_0003T0 CIL_0003T0_0001 CGP 14:30622112-30895065
CIL_0004EI CIL_0004EI_0001 CGP 14:30874514-31026401
CIL_0003SU CIL_0003SU_0001 CGP 14:30893799-31096450

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000159 IDA protein phosphatase type 2A complex
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005516 NAS calmodulin binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0030425 ISS dendrite
GO:0032355 ISS response to estradiol
GO:0032403 IDA protein complex binding
GO:0033147 ISS negative regulation of intracellular estrogen receptor signaling pathway
GO:0043025 ISS neuronal cell body
GO:0043234 ISS protein complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051721 IDA protein phosphatase 2A binding
GO:0070016 IPI armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001729 strn3 striatin, calmodulin binding protein 3 protein_coding Danio_rerio
ENSMUSG00000020954 Strn3 striatin, calmodulin binding protein 3 protein_coding Mus_musculus

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