C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: striatin, calmodulin binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020954 Strn3 10090 - 12:51608541-51691914 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000013130 Strn3-201 51608541-51691914 protein_coding
  ENSMUST00000169503 Strn3-202 51608541-51691914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000013130ENSMUST00000169503
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000013130 N/A N/A 4.131±0.33 10.005±2.26 1.903±0.00 2.973±0.00 N/A 1.509±0.16 3.224±2.01 3.195±0.00 N/A 4.651±1.27 4.251±1.45 4.284±1.57
ENSMUST00000169503 12.816±2.47 69.388±5.80 20.335±7.05 6.646±1.33 14.534±2.68 13.196±3.12 12.921±2.24 9.404±0.72 8.643±4.91 19.847±6.84 34.541±9.69 26.579±9.89 12.535±5.54 2.623±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KV CIL_0007KV_0003 UCNEbase 12:51002016-51608860
CIL_0004EI CIL_0004EI_0002 CGP 12:51593341-51691914
CIL_0003SU CIL_0003SU_0002 CGP 12:51608541-51738939

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000159 IEA protein phosphatase type 2A complex
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005516 IEA calmodulin binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0030425 IEA dendrite
GO:0032355 IEA response to estradiol
GO:0032403 IEA protein complex binding
GO:0033147 IEA negative regulation of intracellular estrogen receptor signaling pathway
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051721 IEA protein phosphatase 2A binding
GO:0070016 IEA armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001729 strn3 striatin, calmodulin binding protein 3 protein_coding Danio_rerio
ENSG00000196792 STRN3 striatin, calmodulin binding protein 3 protein_coding Homo_sapiens

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