C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: striatin, calmodulin binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355683 STRN3-001 ENSG00000196792 9606 - 14:30893799-31026401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355683 7.924±0.00 5.694±0.00 1.773±0.00 3.216±0.31 5.137±2.46 7.054±2.08 5.132±2.61 5.099±1.88 5.084±1.32 4.346±1.72 13.093±10.87 8.133±3.92 3.239±1.68 12.432±3.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KV CIL_0007KV_0002 UCNEbase 14:30606668-30894124
CIL_0003T0 CIL_0003T0_0001 CGP 14:30622112-30895065
CIL_0004EI CIL_0004EI_0001 CGP 14:30874514-31026401
CIL_0003SU CIL_0003SU_0001 CGP 14:30893799-31096450

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000159 IDA protein phosphatase type 2A complex
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005516 NAS calmodulin binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0030425 ISS dendrite
GO:0032355 ISS response to estradiol
GO:0032403 IDA protein complex binding
GO:0033147 ISS negative regulation of intracellular estrogen receptor signaling pathway
GO:0043025 ISS neuronal cell body
GO:0043234 ISS protein complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051721 IDA protein phosphatase 2A binding
GO:0070016 IPI armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169503 Strn3-202 protein_coding Mus_musculus 0 3539
ENSMUST00000013130 Strn3-201 protein_coding Mus_musculus 0 1951
ENSDART00000126967 strn3-001 protein_coding Danio_rerio 0 250

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