C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 5A (MRF1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196843 ARID5A 9606 + 2:96536743-96552638 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357485 ARID5A-001 96536749-96552638 protein_coding
  ENST00000412735 ARID5A-002 96536752-96552630 nonsense_mediated_decay
  ENST00000454558 ARID5A-004 96537345-96552634 protein_coding
  ENST00000467498 ARID5A-007 96536767-96551165 retained_intron
  ENST00000470579 ARID5A-006 96536743-96550285 retained_intron
  ENST00000497920 ARID5A-005 96547390-96552634 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357485ENST00000412735ENST00000454558ENST00000470579ENST00000497920
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357485 12.333±0.00 16.475±0.00 N/A 5.822±0.00 3.553±1.94 15.271±0.00 6.618±0.00 1.935±0.45 N/A 85.633±0.00 19.250±0.00 6.784±2.10 10.811±5.66 6.546±5.00
ENST00000412735 9.323±0.00 22.097±0.00 0.128±0.00 4.534±3.07 3.233±0.88 1.303±0.00 2.970±1.94 4.117±0.00 2.431±1.38 1.917±0.00 2.814±0.33 4.799±1.54 6.619±2.96 2.121±0.94
ENST00000454558 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.605±0.00 0.585±0.00 N/A N/A 0.354±0.00
ENST00000470579 N/A N/A 1.570±0.00 1.442±0.00 9.513±0.00 1.241±0.00 3.542±0.00 N/A 13.471±0.00 7.294±0.00 N/A 16.780±0.00 N/A N/A
ENST00000497920 N/A 8.326±0.00 N/A N/A N/A N/A N/A N/A N/A 32.054±0.00 2.519±0.00 2.172±0.56 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070A CIL_00070A_0001 CGP 2:96497643-96552638
CIL_0003NZ CIL_0003NZ_0001 CGP 2:96536743-96642787

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002062 IEA chondrocyte differentiation
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0035066 IEA positive regulation of histone acetylation
GO:0045892 TAS negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077120 arid5a AT rich interactive domain 5A (MRF1-like) protein_coding Danio_rerio
ENSMUSG00000037447 Arid5a AT rich interactive domain 5A (MRF1-like) protein_coding Mus_musculus

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