C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 5A (MRF1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412735 ARID5A-002 ENSG00000196843 9606 + 2:96536752-96552630 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412735
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412735 9.323±0.00 22.097±0.00 0.128±0.00 4.534±3.07 3.233±0.88 1.303±0.00 2.970±1.94 4.117±0.00 2.431±1.38 1.917±0.00 2.814±0.33 4.799±1.54 6.619±2.96 2.121±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070A CIL_00070A_0001 CGP 2:96497643-96552638
CIL_0003NZ CIL_0003NZ_0001 CGP 2:96536743-96642787

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116629 Arid5a-005 nonsense_mediated_decay Mus_musculus 0 1155
ENSMUST00000115031 Arid5a-004 protein_coding Mus_musculus 0 1133
ENSMUST00000115032 Arid5a-002 protein_coding Mus_musculus 0 1129
ENSMUST00000097778 Arid5a-003 protein_coding Mus_musculus 0 1129
ENSMUST00000115029 Arid5a-011 protein_coding Mus_musculus 0 1038
ENSMUST00000137906 Arid5a-001 protein_coding Mus_musculus 0 1038
ENSMUST00000124280 Arid5a-006 retained_intron Mus_musculus 0 785
ENSMUST00000145179 Arid5a-008 processed_transcript Mus_musculus 0 516
ENSMUST00000126413 Arid5a-007 protein_coding Mus_musculus 0 473
ENSMUST00000147123 Arid5a-013 processed_transcript Mus_musculus 6e-33 147
ENSMUST00000141121 Arid5a-014 retained_intron Mus_musculus 3e-31 141

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