C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 5A (MRF1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357485 ARID5A-001 ENSG00000196843 9606 + 2:96536749-96552638 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000357485
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000357485 12.333±0.00 16.475±0.00 5.822±0.00 3.553±1.94 15.271±0.00 6.618±0.00 1.935±0.45 85.633±0.00 19.250±0.00 6.784±2.10 10.811±5.66 6.546±5.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070A CIL_00070A_0001 CGP 2:96497643-96552638
CIL_0003NZ CIL_0003NZ_0001 CGP 2:96536743-96642787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002062 IEA chondrocyte differentiation
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0035066 IEA positive regulation of histone acetylation
GO:0045892 TAS negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115032 Arid5a-002 protein_coding Mus_musculus 0 1299
ENSMUST00000097778 Arid5a-003 protein_coding Mus_musculus 0 1299
ENSMUST00000115031 Arid5a-004 protein_coding Mus_musculus 0 1131
ENSMUST00000116629 Arid5a-005 nonsense_mediated_decay Mus_musculus 0 1131
ENSMUST00000115029 Arid5a-011 protein_coding Mus_musculus 0 1038
ENSMUST00000137906 Arid5a-001 protein_coding Mus_musculus 0 1038
ENSMUST00000124280 Arid5a-006 retained_intron Mus_musculus 0 785
ENSMUST00000126413 Arid5a-007 protein_coding Mus_musculus 0 643
ENSMUST00000145179 Arid5a-008 processed_transcript Mus_musculus 0 488
ENSMUST00000147123 Arid5a-013 processed_transcript Mus_musculus 0 316
ENSMUST00000141121 Arid5a-014 retained_intron Mus_musculus 0 311
ENSMUST00000142319 Arid5a-010 protein_coding Mus_musculus 4.00001e-40 171

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