C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 5A (MRF1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037447 Arid5a 10090 + 1:36307733-36324029 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097778 Arid5a-003 36307754-36320526 protein_coding
  ENSMUST00000115029 Arid5a-011 36307769-36322988 protein_coding
  ENSMUST00000115031 Arid5a-004 36307754-36321071 protein_coding
  ENSMUST00000115032 Arid5a-002 36307754-36322988 protein_coding
  ENSMUST00000116629 Arid5a-005 36307754-36320528 nonsense_mediated_decay
  ENSMUST00000124280 Arid5a-006 36307754-36319887 retained_intron
  ENSMUST00000126413 Arid5a-007 36307733-36319203 protein_coding
  ENSMUST00000137906 Arid5a-001 36307754-36324029 protein_coding
  ENSMUST00000140218 Arid5a-012 36307779-36316578 retained_intron
  ENSMUST00000141121 Arid5a-014 36317027-36318132 retained_intron
  ENSMUST00000142319 Arid5a-010 36307754-36317442 protein_coding
  ENSMUST00000145179 Arid5a-008 36307754-36319214 processed_transcript
  ENSMUST00000147123 Arid5a-013 36315992-36318136 processed_transcript
  ENSMUST00000150747 Arid5a-009 36307754-36318288 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097778ENSMUST00000115029ENSMUST00000115031ENSMUST00000115032ENSMUST00000116629ENSMUST00000124280ENSMUST00000126413ENSMUST00000137906ENSMUST00000145179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097778 N/A N/A N/A N/A N/A 0.786±0.11 0.401±0.00 0.309±0.00 0.252±0.00 N/A 0.184±0.00 1.433±0.31 0.421±0.00 N/A
ENSMUST00000115029 0.601±0.00 N/A N/A N/A 4.646±0.00 N/A 0.258±0.07 0.186±0.00 N/A 0.864±0.00 0.358±0.04 0.941±0.60 0.321±0.00 N/A
ENSMUST00000115031 N/A 0.198±0.00 N/A N/A 2.431±0.00 0.694±0.16 N/A 0.212±0.06 0.242±0.00 N/A N/A 0.976±0.05 0.255±0.00 N/A
ENSMUST00000115032 0.986±0.26 0.296±0.07 0.765±0.07 0.069±0.00 3.710±0.70 0.855±0.28 0.334±0.15 0.305±0.11 0.232±0.12 1.718±0.21 0.415±0.20 1.359±0.45 0.253±0.05 0.334±0.18
ENSMUST00000116629 2.788±0.32 1.570±0.27 1.580±0.13 1.138±0.66 11.888±2.68 2.301±0.21 0.750±0.21 0.883±0.13 0.742±0.26 3.323±0.96 0.872±0.28 3.289±1.39 0.960±0.32 0.432±0.19
ENSMUST00000124280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A
ENSMUST00000126413 N/A N/A N/A 1.779±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.967±0.02 N/A
ENSMUST00000137906 0.360±0.00 0.169±0.00 0.341±0.04 N/A N/A N/A 0.249±0.01 0.141±0.01 0.101±0.00 N/A N/A 0.516±0.17 0.106±0.00 N/A
ENSMUST00000145179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.212±0.00 N/A 1.130±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070A CIL_00070A_0002 CGP 1:36264597-36324029
CIL_0003NZ CIL_0003NZ_0002 CGP 1:36307733-36369181

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002062 IDA chondrocyte differentiation
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0035066 IDA positive regulation of histone acetylation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077120 arid5a AT rich interactive domain 5A (MRF1-like) protein_coding Danio_rerio
ENSG00000196843 ARID5A AT rich interactive domain 5A (MRF1-like) protein_coding Homo_sapiens

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