C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C1D nuclear receptor corepressor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197223 C1D 9606 - 2:68041130-68110948 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355848 C1D-001 68041130-68062983 protein_coding
  ENST00000407324 C1D-002 68042209-68062982 protein_coding
  ENST00000409302 C1D-007 68042677-68063009 protein_coding
  ENST00000410067 C1D-006 68042656-68063025 protein_coding
  ENST00000470189 C1D-005 68047277-68110948 processed_transcript
  ENST00000479484 C1D-004 68042714-68046568 retained_intron
  ENST00000485709 C1D-003 68042832-68062994 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355848ENST00000407324ENST00000409302ENST00000410067ENST00000479484ENST00000485709
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355848 N/A N/A 1.120±0.00 0.227±0.00 N/A 0.295±0.00 N/A N/A 0.558±0.00 N/A 0.544±0.12 N/A N/A
ENST00000407324 4.192±0.00 8.110±0.00 5.028±3.22 4.016±2.98 2.896±2.39 2.899±2.18 5.361±4.14 0.877±0.17 0.417±0.00 1.710±1.21 6.701±3.13 8.270±1.79 8.465±0.44
ENST00000409302 N/A N/A N/A 0.310±0.00 N/A 1.020±0.00 N/A N/A N/A 1.459±0.00 3.210±0.00 N/A 3.422±0.00
ENST00000410067 N/A N/A 3.747±0.00 0.988±0.00 0.412±0.00 N/A 2.956±0.00 1.016±0.00 1.508±0.00 1.489±0.00 3.786±0.00 11.735±0.00 8.107±0.00
ENST00000479484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.362±0.00 N/A N/A
ENST00000485709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.927±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JR CIL_0007JR_0003 UCNEbase 2:66138106-68180953
CIL_0008I2 CIL_0008I2_0001 VISTA 2:67892841-68494859

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000176 TAS nuclear exosome (RNase complex)
GO:0000460 IMP maturation of 5.8S rRNA
GO:0003677 IEA DNA binding
GO:0003714 IEA transcription corepressor activity
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0017053 IEA transcriptional repressor complex
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021112 c1d C1D nuclear receptor co-repressor protein_coding Danio_rerio
ENSMUSG00000000581 C1d C1D nuclear receptor co-repressor protein_coding Mus_musculus

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