C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C1D nuclear receptor corepressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355848 C1D-001 ENSG00000197223 9606 - 2:68041130-68062983 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLungOvaryENST00000355848
Transcript ID Brain Breast Heart Lung Ovary
ENST00000355848 1.120±0.00 0.227±0.00 0.295±0.00 0.558±0.00 0.544±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JR CIL_0007JR_0003 UCNEbase 2:66138106-68180953
CIL_0008I2 CIL_0008I2_0001 VISTA 2:67892841-68494859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000176 TAS nuclear exosome (RNase complex)
GO:0000460 IMP maturation of 5.8S rRNA
GO:0003677 IEA DNA binding
GO:0003714 IEA transcription corepressor activity
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0017053 IEA transcriptional repressor complex
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000594 C1d-001 protein_coding Mus_musculus 0 523
ENSMUST00000156784 C1d-002 protein_coding Mus_musculus 0 444
ENSMUST00000135568 C1d-004 processed_transcript Mus_musculus 0 324

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