C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C1D nuclear receptor corepressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407324 C1D-002 ENSG00000197223 9606 - 2:68042209-68062982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407324
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407324 4.192±0.00 8.110±0.00 5.028±3.22 4.016±2.98 2.896±2.39 2.899±2.18 5.361±4.14 0.877±0.17 0.417±0.00 1.710±1.21 6.701±3.13 8.270±1.79 8.465±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JR CIL_0007JR_0003 UCNEbase 2:66138106-68180953
CIL_0008I2 CIL_0008I2_0001 VISTA 2:67892841-68494859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000176 TAS nuclear exosome (RNase complex)
GO:0000460 IMP maturation of 5.8S rRNA
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000594 C1d-001 protein_coding Mus_musculus 0 523
ENSMUST00000156784 C1d-002 protein_coding Mus_musculus 0 444
ENSMUST00000135568 C1d-004 processed_transcript Mus_musculus 0 324

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