C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197548 ATG7 9606 + 3:11272309-11557665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354449 ATG7-001 11272416-11557665 protein_coding
  ENST00000354956 ATG7-004 11272416-11555083 protein_coding
  ENST00000414717 ATG7-020 11364657-11446936 protein_coding
  ENST00000418682 ATG7-012 11272406-11315482 nonsense_mediated_decay
  ENST00000419112 ATG7-006 11272423-11306995 protein_coding
  ENST00000423116 ATG7-008 11277219-11309028 protein_coding
  ENST00000424071 ATG7-015 11309009-11358610 nonsense_mediated_decay
  ENST00000427759 ATG7-021 11364658-11477307 protein_coding
  ENST00000434066 ATG7-016 11313343-11342279 nonsense_mediated_decay
  ENST00000435760 ATG7-007 11272348-11299400 protein_coding
  ENST00000444619 ATG7-005 11272403-11307008 protein_coding
  ENST00000446110 ATG7-022 11364659-11510339 protein_coding
  ENST00000446450 ATG7-002 11272416-11554988 protein_coding
  ENST00000451513 ATG7-009 11272309-11313420 protein_coding
  ENST00000451830 ATG7-010 11272348-11315388 protein_coding
  ENST00000460291 ATG7-018 11342200-11348747 retained_intron
  ENST00000460444 ATG7-023 11272375-11304667 processed_transcript
  ENST00000461278 ATG7-025 11332713-11342207 retained_intron
  ENST00000464282 ATG7-014 11308475-11313396 processed_transcript
  ENST00000467121 ATG7-026 11360581-11363096 retained_intron
  ENST00000469654 ATG7-024 11272443-11304549 processed_transcript
  ENST00000470474 ATG7-011 11272382-11299170 retained_intron
  ENST00000478638 ATG7-017 11331402-11347971 processed_transcript
  ENST00000488924 ATG7-013 11308442-11331393 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMusclePlacentaTestisENST00000354449ENST00000354956ENST00000434066ENST00000446450ENST00000451513ENST00000451830
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000354449 N/A N/A N/A N/A N/A N/A 1.159±0.00 N/A N/A N/A
ENST00000354956 5.516±0.00 4.975±0.00 5.132±0.00 1.924±0.64 N/A 2.515±0.00 2.909±0.00 2.228±0.02 6.392±0.50 8.702±0.00
ENST00000434066 N/A N/A N/A N/A 3.338±0.00 N/A N/A N/A N/A N/A
ENST00000446450 N/A N/A N/A N/A N/A N/A N/A 1.983±0.00 5.285±0.00 N/A
ENST00000451513 N/A N/A N/A N/A 1.643±0.00 N/A N/A N/A N/A N/A
ENST00000451830 N/A N/A N/A N/A N/A N/A N/A 4.317±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061H CIL_00061H_0001 CGP 3:11137093-11557665
CIL_0005SK CIL_0005SK_0001 CGP 3:11272309-11771350

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0001889 IEA liver development
GO:0003824 IEA catalytic activity
GO:0004839 IEA ubiquitin activating enzyme activity
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005829 IBA cytosol
GO:0005930 ISS axoneme
GO:0006464 TAS cellular protein modification process
GO:0006497 IDA protein lipidation
GO:0006501 IBA C-terminal protein lipidation
GO:0006520 IEA cellular amino acid metabolic process
GO:0006914 IEA autophagy
GO:0006995 IBA cellular response to nitrogen starvation
GO:0006996 IEA organelle organization
GO:0007005 IEA mitochondrion organization
GO:0007628 IEA adult walking behavior
GO:0008134 IPI transcription factor binding
GO:0009267 IDA cellular response to starvation
GO:0009791 IEA post-embryonic development
GO:0010508 IMP positive regulation of autophagy
GO:0015031 IEA protein transport
GO:0016239 IMP positive regulation of macroautophagy
GO:0016567 IEA protein ubiquitination
GO:0019778 IBA Atg12 activating enzyme activity
GO:0019779 IBA Atg8 activating enzyme
GO:0021680 IEA cerebellar Purkinje cell layer development
GO:0021860 IEA pyramidal neuron development
GO:0021955 IEA central nervous system neuron axonogenesis
GO:0021987 IEA cerebral cortex development
GO:0030163 IBA protein catabolic process
GO:0031175 IEA neuron projection development
GO:0031396 IEA regulation of protein ubiquitination
GO:0031401 IDA positive regulation of protein modification process
GO:0032446 IBA protein modification by small protein conjugation
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0039689 IEA negative stranded viral RNA replication
GO:0042594 IEA response to starvation
GO:0042803 IDA protein homodimerization activity
GO:0043065 IMP positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0044805 IBA late nucleophagy
GO:0045732 IMP positive regulation of protein catabolic process
GO:0050877 IEA neurological system process
GO:0055013 IEA cardiac muscle cell development
GO:0061024 IEA membrane organization
GO:0061025 TAS membrane fusion
GO:0070257 IEA positive regulation of mucus secretion
GO:0071455 IDA cellular response to hyperoxia
GO:2000619 IEA negative regulation of histone H4-K16 acetylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078008 ATG7 autophagy related 7 protein_coding Danio_rerio
ENSMUSG00000030314 Atg7 autophagy related 7 protein_coding Mus_musculus

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