C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354956 ATG7-004 ENSG00000197548 9606 + 3:11272416-11555083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverLungMusclePlacentaTestisENST00000354956
Transcript ID Adrenal Brain Breast Heart Liver Lung Muscle Placenta Testis
ENST00000354956 5.516±0.00 4.975±0.00 5.132±0.00 1.924±0.64 2.515±0.00 2.909±0.00 2.228±0.02 6.392±0.50 8.702±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061H CIL_00061H_0001 CGP 3:11137093-11557665
CIL_0005SK CIL_0005SK_0001 CGP 3:11272309-11771350

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005829 IBA cytosol
GO:0005930 ISS axoneme
GO:0006464 TAS cellular protein modification process
GO:0006497 IDA protein lipidation
GO:0006501 IBA C-terminal protein lipidation
GO:0006914 IEA autophagy
GO:0006995 IBA cellular response to nitrogen starvation
GO:0008134 IPI transcription factor binding
GO:0009267 IDA cellular response to starvation
GO:0010508 IMP positive regulation of autophagy
GO:0015031 IEA protein transport
GO:0016239 IMP positive regulation of macroautophagy
GO:0019778 IBA Atg12 activating enzyme activity
GO:0019779 IBA Atg8 activating enzyme
GO:0030163 IBA protein catabolic process
GO:0031401 IDA positive regulation of protein modification process
GO:0032446 IBA protein modification by small protein conjugation
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0042803 IDA protein homodimerization activity
GO:0043065 IMP positive regulation of apoptotic process
GO:0044805 IBA late nucleophagy
GO:0045732 IMP positive regulation of protein catabolic process
GO:0061025 TAS membrane fusion
GO:0071455 IDA cellular response to hyperoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182428 Atg7-003 protein_coding Mus_musculus 0 2185
ENSMUST00000032457 Atg7-001 protein_coding Mus_musculus 0 2002
ENSMUST00000182902 Atg7-005 protein_coding Mus_musculus 0 1993
ENSMUST00000182793 Atg7-004 protein_coding Mus_musculus 0 1993
ENSMUST00000169310 Atg7-006 protein_coding Mus_musculus 0 1993
ENSMUST00000183165 Atg7-002 protein_coding Mus_musculus 0 1522
ENSMUST00000182035 Atg7-011 protein_coding Mus_musculus 0 601
ENSMUST00000182034 Atg7-009 protein_coding Mus_musculus 0 575
ENSMUST00000183127 Atg7-013 retained_intron Mus_musculus 0 486
ENSMUST00000182510 Atg7-008 protein_coding Mus_musculus 0 479
ENSMUST00000182169 Atg7-012 protein_coding Mus_musculus 0 243
ENSMUST00000182860 Atg7-014 processed_transcript Mus_musculus 5.04467e-44 183

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