C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354449 ATG7-001 ENSG00000197548 9606 + 3:11272416-11557665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungENST00000354449
Transcript ID Lung
ENST00000354449 1.159±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061H CIL_00061H_0001 CGP 3:11137093-11557665
CIL_0005SK CIL_0005SK_0001 CGP 3:11272309-11771350

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0001889 IEA liver development
GO:0003824 IEA catalytic activity
GO:0004839 IEA ubiquitin activating enzyme activity
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005829 IBA cytosol
GO:0005930 ISS axoneme
GO:0006464 TAS cellular protein modification process
GO:0006497 IDA protein lipidation
GO:0006501 IBA C-terminal protein lipidation
GO:0006520 IEA cellular amino acid metabolic process
GO:0006914 IEA autophagy
GO:0006995 IBA cellular response to nitrogen starvation
GO:0006996 IEA organelle organization
GO:0007005 IEA mitochondrion organization
GO:0007628 IEA adult walking behavior
GO:0008134 IPI transcription factor binding
GO:0009267 IDA cellular response to starvation
GO:0009791 IEA post-embryonic development
GO:0010508 IMP positive regulation of autophagy
GO:0015031 IEA protein transport
GO:0016239 IMP positive regulation of macroautophagy
GO:0016567 IEA protein ubiquitination
GO:0019778 IBA Atg12 activating enzyme activity
GO:0019779 IBA Atg8 activating enzyme
GO:0021680 IEA cerebellar Purkinje cell layer development
GO:0021860 IEA pyramidal neuron development
GO:0021955 IEA central nervous system neuron axonogenesis
GO:0021987 IEA cerebral cortex development
GO:0030163 IBA protein catabolic process
GO:0031175 IEA neuron projection development
GO:0031396 IEA regulation of protein ubiquitination
GO:0031401 IDA positive regulation of protein modification process
GO:0032446 IBA protein modification by small protein conjugation
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0039689 IEA negative stranded viral RNA replication
GO:0042594 IEA response to starvation
GO:0042803 IDA protein homodimerization activity
GO:0043065 IMP positive regulation of apoptotic process
GO:0043066 IEA negative regulation of apoptotic process
GO:0044805 IBA late nucleophagy
GO:0045732 IMP positive regulation of protein catabolic process
GO:0050877 IEA neurological system process
GO:0055013 IEA cardiac muscle cell development
GO:0061024 IEA membrane organization
GO:0061025 TAS membrane fusion
GO:0070257 IEA positive regulation of mucus secretion
GO:0071455 IDA cellular response to hyperoxia
GO:2000619 IEA negative regulation of histone H4-K16 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032457 Atg7-001 protein_coding Mus_musculus 0 2285
ENSMUST00000182902 Atg7-005 protein_coding Mus_musculus 0 2276
ENSMUST00000182793 Atg7-004 protein_coding Mus_musculus 0 2276
ENSMUST00000169310 Atg7-006 protein_coding Mus_musculus 0 2276
ENSMUST00000182428 Atg7-003 protein_coding Mus_musculus 0 2002
ENSMUST00000183165 Atg7-002 protein_coding Mus_musculus 0 1622
ENSMUST00000182035 Atg7-011 protein_coding Mus_musculus 0 601
ENSMUST00000182034 Atg7-009 protein_coding Mus_musculus 0 575
ENSMUST00000183127 Atg7-013 retained_intron Mus_musculus 0 486
ENSMUST00000182510 Atg7-008 protein_coding Mus_musculus 0 479
ENSMUST00000182860 Atg7-014 processed_transcript Mus_musculus 0 283
ENSMUST00000182169 Atg7-012 protein_coding Mus_musculus 0 243
ENSMUST00000152710 Vgll4-002 processed_transcript Mus_musculus 5e-22 111

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