C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin, alpha, non-erythrocytic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197694 SPTAN1 9606 + 9:128552558-128633665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358161 SPTAN1-201 128552558-128633665 protein_coding
  ENST00000372731 SPTAN1-004 128552590-128633662 protein_coding
  ENST00000372739 SPTAN1-005 128552590-128633662 protein_coding
  ENST00000461855 SPTAN1-008 128599964-128607989 processed_transcript
  ENST00000472211 SPTAN1-001 128580956-128581946 processed_transcript
  ENST00000475367 SPTAN1-006 128592984-128599704 processed_transcript
  ENST00000476825 SPTAN1-002 128611901-128615806 processed_transcript
  ENST00000491712 SPTAN1-003 128621178-128625855 processed_transcript
  ENST00000497216 SPTAN1-007 128552605-128553336 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358161ENST00000372731ENST00000372739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358161 15.400±0.00 10.908±0.00 5.598±0.00 N/A 8.152±5.51 7.852±2.08 17.622±0.00 7.816±5.04 N/A 12.083±0.00 2.105±0.00 20.422±11.70 25.703±7.28 22.634±2.21
ENST00000372731 7.828±0.00 5.573±0.00 4.793±0.00 N/A 10.780±6.43 6.671±0.00 N/A 7.535±0.26 10.735±9.05 5.866±0.00 N/A 17.263±6.35 8.095±1.75 9.492±1.62
ENST00000372739 N/A N/A 4.324±0.00 61.667±15.03 7.510±0.00 12.163±7.96 N/A 2.208±0.00 3.991±1.45 14.487±0.00 3.896±1.66 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EB CIL_0007EB_0001 CGP 9:128504700-128633665
CIL_0002LY CIL_0002LY_0002 CGP 9:128552558-128656787

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005829 TAS cytosol
GO:0005916 IEA fascia adherens
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0007411 TAS axon guidance
GO:0008091 TAS spectrin
GO:0015630 IDA microtubule cytoskeleton
GO:0016020 TAS membrane
GO:0016328 IEA lateral plasma membrane
GO:0030018 IEA Z disc
GO:0030507 IEA spectrin binding
GO:0030863 IEA cortical cytoskeleton
GO:0031982 IDA vesicle
GO:0032437 IEA cuticular plate
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046982 IEA protein heterodimerization activity
GO:0051693 IEA actin filament capping
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019231 spna2 spectrin alpha 2 protein_coding Danio_rerio
ENSMUSG00000057738 Sptan1 spectrin alpha, non-erythrocytic 1 protein_coding Mus_musculus

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