C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin alpha, non-erythrocytic 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057738 Sptan1 10090 + 2:29965560-30031451 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046257 Sptan1-003 29965717-30031451 protein_coding
  ENSMUST00000095083 Sptan1-002 29965682-30031451 protein_coding
  ENSMUST00000100225 Sptan1-004 29965680-30031445 protein_coding
  ENSMUST00000113717 Sptan1-001 29965560-30031451 protein_coding
  ENSMUST00000113719 Sptan1-201 29965560-30031448 protein_coding
  ENSMUST00000113741 Sptan1-006 29965682-29983169 protein_coding
  ENSMUST00000124494 Sptan1-012 30027564-30030517 processed_transcript
  ENSMUST00000129241 Sptan1-010 30025593-30031096 protein_coding
  ENSMUST00000131827 Sptan1-007 29991958-29994049 retained_intron
  ENSMUST00000143918 Sptan1-005 29965677-29994037 retained_intron
  ENSMUST00000149038 Sptan1-008 30001884-30008100 retained_intron
  ENSMUST00000149846 Sptan1-009 30021821-30024983 retained_intron
  ENSMUST00000152453 Sptan1-011 30027597-30030370 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046257ENSMUST00000095083ENSMUST00000100225ENSMUST00000113717ENSMUST00000113719ENSMUST00000124494ENSMUST00000129241ENSMUST00000149038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046257 N/A N/A 8.944±2.65 N/A 9.998±0.00 N/A 3.023±0.00 N/A 1.828±0.40 12.227±0.27 2.751±0.87 45.679±9.45 16.880±9.41 21.386±24.77
ENSMUST00000095083 22.776±2.40 7.671±1.01 13.014±0.52 N/A 11.297±1.59 19.020±5.15 5.905±1.42 25.080±2.90 4.481±1.91 16.322±3.36 2.273±0.00 20.057±7.34 19.384±2.61 8.290±2.62
ENSMUST00000100225 13.379±5.37 4.368±1.39 N/A 167.957±141.19 8.048±4.21 5.102±1.56 10.754±1.87 6.984±0.00 1.922±0.55 44.056±2.37 2.891±0.91 12.702±12.03 16.833±6.37 13.212±0.00
ENSMUST00000113717 9.315±0.77 2.129±0.14 N/A 24.613±0.19 4.322±0.52 N/A N/A 5.740±1.52 N/A N/A 1.920±0.41 4.451±0.00 N/A 5.494±1.32
ENSMUST00000113719 N/A N/A N/A N/A N/A N/A 3.218±0.49 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 163.279±0.00 N/A N/A
ENSMUST00000129241 N/A N/A 31.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 80.233±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EB CIL_0007EB_0002 CGP 2:29935426-30031451
CIL_0002LY CIL_0002LY_0003 CGP 2:29965560-30048881

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005509 IEA calcium ion binding
GO:0005516 IEA calmodulin binding
GO:0005916 IDA fascia adherens
GO:0015630 IEA microtubule cytoskeleton
GO:0016020 IDA membrane
GO:0016328 IDA lateral plasma membrane
GO:0030018 IDA Z disc
GO:0030507 IDA spectrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0031982 IEA vesicle
GO:0032437 IDA cuticular plate
GO:0033270 IDA paranode region of axon
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046982 IDA protein heterodimerization activity
GO:0051693 IEA actin filament capping
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019231 spna2 spectrin alpha 2 protein_coding Danio_rerio
ENSG00000197694 SPTAN1 spectrin, alpha, non-erythrocytic 1 protein_coding Homo_sapiens

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