C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, alpha, non-erythrocytic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372731 SPTAN1-004 ENSG00000197694 9606 + 9:128552590-128633662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000372731
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000372731 7.828±0.00 5.573±0.00 4.793±0.00 10.780±6.43 6.671±0.00 7.535±0.26 10.735±9.05 5.866±0.00 17.263±6.35 8.095±1.75 9.492±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EB CIL_0007EB_0001 CGP 9:128504700-128633665
CIL_0002LY CIL_0002LY_0002 CGP 9:128552558-128656787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005829 TAS cytosol
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0007411 TAS axon guidance
GO:0008091 TAS spectrin
GO:0015630 IDA microtubule cytoskeleton
GO:0016020 TAS membrane
GO:0031982 IDA vesicle
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0051693 IEA actin filament capping
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095083 Sptan1-002 protein_coding Mus_musculus 0 9450
ENSMUST00000100225 Sptan1-004 protein_coding Mus_musculus 0 9385
ENSDART00000102251 spna2-001 protein_coding Danio_rerio 0 5443
ENSMUST00000046257 Sptan1-003 protein_coding Mus_musculus 0 5343
ENSMUST00000113717 Sptan1-001 protein_coding Mus_musculus 0 5273
ENSDART00000102256 spna2-201 protein_coding Danio_rerio 0 4798
ENSMUST00000113719 Sptan1-201 protein_coding Mus_musculus 0 4279
ENSMUST00000143918 Sptan1-005 retained_intron Mus_musculus 0 1066
ENSMUST00000129241 Sptan1-010 protein_coding Mus_musculus 0 996
ENSMUST00000149038 Sptan1-008 retained_intron Mus_musculus 0 843
ENSMUST00000124494 Sptan1-012 processed_transcript Mus_musculus 0 575
ENSMUST00000113741 Sptan1-006 protein_coding Mus_musculus 0 473
ENSMUST00000152453 Sptan1-011 retained_intron Mus_musculus 0 392
ENSMUST00000149846 Sptan1-009 retained_intron Mus_musculus 0 274
ENSMUST00000131827 Sptan1-007 retained_intron Mus_musculus 0 255

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