C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CLOCK-interacting pacemaker
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198894 CIPC 9606 + 14:77098097-77117287 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361786 CIPC-001 77098097-77117287 protein_coding
  ENST00000554447 CIPC-007 77099113-77113572 protein_coding
  ENST00000554658 CIPC-005 77098312-77113522 protein_coding
  ENST00000555200 CIPC-008 77099176-77113542 protein_coding
  ENST00000555437 CIPC-002 77098126-77113566 protein_coding
  ENST00000555611 CIPC-004 77098282-77113545 protein_coding
  ENST00000556863 CIPC-003 77098258-77106090 retained_intron
  ENST00000557115 CIPC-006 77098366-77113588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361786
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361786 6.245±0.00 1.574±0.00 11.487±2.01 3.712±1.79 6.164±0.00 8.219±2.75 3.291±0.00 2.519±0.52 4.013±1.18 13.580±7.02 3.572±1.96 2.065±1.06 6.444±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VF CIL_0007VF_0001 VISTA 14:76618298-77221354
CIL_0008WP CIL_0008WP_0001 VISTA 14:76629854-77233554
CIL_000867 CIL_000867_0001 VISTA 14:76636452-77239164
CIL_0007VT CIL_0007VT_0001 VISTA 14:76740528-77345010
CIL_0003P0 CIL_0003P0_0001 CGP 14:77024543-77117287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0042754 ISS negative regulation of circadian rhythm
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075397 si:dkey-204k5.2 si:dkey-204k5.2 protein_coding Danio_rerio
ENSDARG00000078095 si:ch73-387e10.3 si:ch73-387e10.3 protein_coding Danio_rerio
ENSMUSG00000034157 Cipc CLOCK interacting protein, circadian protein_coding Mus_musculus

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